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13_1_40cm_3_scaffold_1325

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1325_1
Vibrio scophthalmi, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

958..1491
DNA (534bp) protein (178aa)
Uncharacterized protein {ECO:0000313|EMBL:EGU31410.1}; TaxID=870967 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio scophthalmi LMG 19158.;"
13_1_40cm_3_scaffold_1325_2
unknown

Not on your lists

1508..2257
DNA (750bp) protein (250aa)

This feature has no annotations

13_1_40cm_3_scaffold_1325_3
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

2556..3764
DNA (1209bp) protein (403aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RBG_16_Acidobacteria_68_9_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=2304889 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_3_scaffold_1325_4
Yersinia frederiksenii, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3873..4115
DNA (243bp) protein (81aa)
Superinfection immunity family protein {ECO:0000313|EMBL:KGA47301.1}; TaxID=349966 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Ye
13_1_40cm_3_scaffold_1325_5
unknown

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comp(4190..4531)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_3_scaffold_1325_6
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4866..5003)
DNA (138bp) protein (46aa)
Putative thiol oxidoreductase {ECO:0000313|EMBL:AKI02189.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC2
13_1_40cm_3_scaffold_1325_7
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(4996..5901)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV59_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE87766.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsen
13_1_40cm_3_scaffold_1325_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6264..6578
DNA (315bp) protein (105aa)
integrase family protein; K14059 integrase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_3_scaffold_1325_trna_1
unknown

Not on your lists

comp(6524..6598)
DNA (75bp)
transferRNA
13_1_40cm_3_scaffold_1325_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6658..8406)
DNA (1749bp) protein (583aa)
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
RNA polymerase sigma factor id=1890656 bin=GWD2_Deltaproteobacteria_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RpoD subfamily RNA polymerase sigma-70 subunit
13_1_40cm_3_scaffold_1325_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8457..10259)
DNA (1803bp) protein (601aa)
DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
DNA primase id=1890659 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
DNA primase
13_1_40cm_3_scaffold_1325_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10269..10802)
DNA (534bp) protein (178aa)
colicin V production protein; K03558 membrane protein required for colicin V production Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Membrane protein implicated in colicin V production id=1890671 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
colicin V production protein
13_1_40cm_3_scaffold_1325_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11039..11485)
DNA (447bp) protein (149aa)
hypothetical protein; K09117 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Uncharacterized protein YqeY id=1890672 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutamyl-tRNA amidotransferase
13_1_40cm_3_scaffold_1325_13
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11524..11718)
DNA (195bp) protein (65aa)
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
30S ribosomal protein S21 id=1890673 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsU; 30S ribosomal protein S21
13_1_40cm_3_scaffold_1325_14
unknown

Not on your lists

11806..11937
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_3_scaffold_1325_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11923..12657)
DNA (735bp) protein (245aa)
UgpQ; glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
glpQ; glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46)
Glycerophosphoryl diester phosphodiesterase family protein id=1890674 bin=GWD2_Deltaproteobacteria_55_8 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
13_1_40cm_3_scaffold_1325_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12712..13464)
DNA (753bp) protein (251aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Hemolysin A id=1999308 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hemolysin
13_1_40cm_3_scaffold_1325_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13443..14051)
DNA (609bp) protein (203aa)
dxs-1; 1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
deoxyxylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase 1 id=1999307 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_3_scaffold_1325_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14008..15297)
DNA (1290bp) protein (430aa)
dxs-1; 1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
1-deoxy-D-xylulose-5-phosphate synthase 1 id=1999307 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
deoxyxylulose-5-phosphate synthase
13_1_40cm_3_scaffold_1325_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15297..16235)
DNA (939bp) protein (313aa)
geranyltranstransferase (EC:2.5.1.10); K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Trans-isoprenyl diphosphate synthase id=1999306 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
trans-isoprenyl diphosphate synthase
13_1_40cm_3_scaffold_1325_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16390..16659)
DNA (270bp) protein (90aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Exodeoxyribonuclease 7 small subunit id=1999305 bin=GWD2_Deltaproteobacteria_55_8 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
exodeoxyribonuclease VII small subunit
13_1_40cm_3_scaffold_1325_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16661..17593)
DNA (933bp) protein (311aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Peptidase, M23/M37 family id=1999304 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Peptidase M23
13_1_40cm_3_scaffold_1325_22
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17586..18491)
DNA (906bp) protein (302aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
xseA; Exodeoxyribonuclease 7 large subunit (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit) (EC:3.1.11.6) id=14428676 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
exodeoxyribonuclease VII large subunit
13_1_40cm_3_scaffold_1325_23
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18519..18725)
DNA (207bp) protein (69aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
13_1_40cm_3_scaffold_1325_24
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18824..19450)
DNA (627bp) protein (209aa)
peptidase S41A, C-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Carboxyl-terminal protease id=2309742 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
peptidase S41
13_1_40cm_3_scaffold_1325_25
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19425..20150)
DNA (726bp) protein (242aa)
ctpA-2; carboxy-terminal processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
carboxyl-terminal protease (EC:3.4.21.102)
Carboxyl-terminal protease n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GFC0_GEOUR
13_1_40cm_3_scaffold_1325_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20214..21374)
DNA (1161bp) protein (387aa)
M23/M37 peptidase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein id=14431375 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
zinc metalloendopeptidase M23 domain-containing protein
13_1_40cm_3_scaffold_1325_27
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21368..22267)
DNA (900bp) protein (300aa)
Cell division protein FtsX n=2 Tax=Geobacter sulfurreducens RepID=D7AJK5_GEOSK
cell division protein FtsX; K09811 cell division transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ftsX; cell division ABC transporter membrane protein FtsX
13_1_40cm_3_scaffold_1325_28
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22264..22953)
DNA (690bp) protein (230aa)
Cell division ATP-binding protein FtsE n=2 Tax=Geobacter metallireducens RepID=Q39UI9_GEOMG
putative cell division ABC transporter ATP-binding protein FtsE Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
ftsE; cell division ATP-binding protein FtsE
13_1_40cm_3_scaffold_1325_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23108..25327
DNA (2220bp) protein (740aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein id=14430303 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10 rbh
hypothetical protein
Displaying items 1-30 of 35 in total

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