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13_1_40cm_3_scaffold_17684

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_17684_1
unknown

Not on your lists

comp(3..737)
DNA (735bp) protein (245aa)

This feature has no annotations

13_1_40cm_3_scaffold_17684_2
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(893..1291)
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:ADE12763.1}; Flags: Precursor;; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="S
13_1_40cm_3_scaffold_17684_3
unknown

Not on your lists

1474..2559
DNA (1086bp) protein (362aa)

This feature has no annotations

13_1_40cm_3_scaffold_17684_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

2593..4047
DNA (1455bp) protein (485aa)
TPR repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024U4_SOLUE
TPR repeat-containing protein Tax=RBG_16_Acidobacteria_70_10_curated
hypothetical protein
13_1_40cm_3_scaffold_17684_5
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..4705)
DNA (510bp) protein (170aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cy
Sensory box histidine kinase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PA41_9DELT
bphP; sensor histidine kinase
13_1_40cm_3_scaffold_17684_6
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4836..5054)
DNA (219bp) protein (73aa)
Zinc-containing alcohol dehydrogenase superfamily protein n=5 Tax=Mycobacterium RepID=H8IQ32_MYCIA
Zinc-containing alcohol dehydrogenase superfamily protein {ECO:0000313|EMBL:CDO06657.1}; TaxID=258533 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="M
alcohol dehydrogenase
13_1_40cm_3_scaffold_17684_7
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5149..5775)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000369D92B
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:EDZ99429.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;"
alcohol dehydrogenase
13_1_40cm_3_scaffold_17684_8
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5800..6156)
DNA (357bp) protein (119aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EPE3_9NOCA
putative RNA polymerase ECF-type sigma factor
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:AFT99281.1}; TaxID=1133849 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis
13_1_40cm_3_scaffold_17684_9
unknown

Not on your lists

6399..6599
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_3_scaffold_17684_10
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(6724..7275)
DNA (552bp) protein (184aa)
Regulatory protein TetR n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U455_DEIML
regulatory protein TetR Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
regulatory protein TetR
13_1_40cm_3_scaffold_17684_11
Pseudomonas sp. GM17, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7365..7727
DNA (363bp) protein (121aa)
Cupin n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DD18_9PSED
cupin
Uncharacterized protein {ECO:0000313|EMBL:EJM14688.1}; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. G
13_1_40cm_3_scaffold_17684_12

Not on your lists

7748..7972
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AUM9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD71650.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_40cm_3_scaffold_17684_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8093..9130
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F4Z7_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB48575.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woe
13_1_40cm_3_scaffold_17684_14
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9312..9656
DNA (345bp) protein (115aa)
DGPFAETKE domain-containing protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IPQ0_ANADE
DGPFAETKE domain-containing protein
DGPFAETKE domain-containing protein {ECO:0000313|EMBL:ABC80782.1}; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyx
13_1_40cm_3_scaffold_17684_15
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9704..10138)
DNA (435bp) protein (145aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TEI5_BURPP
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACD18506.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bu
13_1_40cm_3_scaffold_17684_16
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10689..11435)
DNA (747bp) protein (249aa)
MFS transporter n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RVL4_9RALS
MFS transporter {ECO:0000313|EMBL:EPX96333.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
short-chain dehydrogenase/reductase SDR
13_1_40cm_3_scaffold_17684_17
Pseudomonas sp. GM48, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11619..12518
DNA (900bp) protein (300aa)
Transcriptional regulator n=1 Tax=Pseudomonas sp. GM48 RepID=J2S9X2_9PSED
Transcriptional regulator {ECO:0000313|EMBL:EJM58449.1}; TaxID=1144330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp.
LysR family transcriptional regulator
13_1_40cm_3_scaffold_17684_18
R_OD1_Yanofskybacteria_43_42, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(12964..13875)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003613F81
Ig family protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_42_curated
OmpA/MotB domain-containing protein
13_1_40cm_3_scaffold_17684_19
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13976..16777)
DNA (2802bp) protein (934aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XMZ2_DESMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH77295.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovib
13_1_40cm_3_scaffold_17684_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17389..17991
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJQ9_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49463.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestr
13_1_40cm_3_scaffold_17684_21
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18598..19422
DNA (825bp) protein (275aa)
alpha/beta hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002EF287F
Alpha/beta hydrolase {ECO:0000313|EMBL:KJC58001.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. L
non-heme haloperoxidase
13_1_40cm_3_scaffold_17684_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19571..19987
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H657_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB07618.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
signal peptide protein
13_1_40cm_3_scaffold_17684_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20684..20899)
DNA (216bp) protein (72aa)
id=4472801 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4472801 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_3_scaffold_17684_24
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(20903..21082)
DNA (180bp) protein (60aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_3_scaffold_17684_25
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21489..22082
DNA (594bp) protein (198aa)
pre-mRNA-splicing ATP-dependent RNA helicase (EC:3.6.1.-) id=24486069 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
type III restriction protein res subunit Tax=CSP1_8_Deltaproteobacteria
hypothetical protein
13_1_40cm_3_scaffold_17684_26
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22079..22969
DNA (891bp) protein (297aa)
pre-mRNA-splicing ATP-dependent RNA helicase (EC:3.6.1.-) id=24486069 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative helicase (EC:3.6.4.-)
type III restriction protein res subunit Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
13_1_40cm_3_scaffold_17684_27
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23051..23335
DNA (285bp) protein (95aa)
hypothetical protein id=24486070 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Rhodococcus opacus genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytoplasmic protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
cytoplasmic protein
13_1_40cm_3_scaffold_17684_28
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

23367..23969
DNA (603bp) protein (201aa)
hypothetical protein Tax=RBG_13_Planctomycetes_60_9_curated
Putative uncharacterized protein id=4838436 bin=GWC2_Chlamydiae_50_10 species=Candidatus Accumulibacter phosphatis genus=Candidatus Accumulibacter taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Chlamydiae_50_10 organism_group=Chlamydiae organism_desc=Good +
hypothetical protein
13_1_40cm_3_scaffold_17684_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23926..24369
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003457496
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_1_40cm_3_scaffold_17684_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24339..24608
DNA (270bp) protein (90aa)
Prevent-host-death protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J2Z7_RHOP2
prevent-host-death protein
Prevent-host-death protein {ECO:0000313|EMBL:ABD05163.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomo
Displaying items 1-30 of 33 in total

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