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13_1_20CM_4_Cyanobacteria_61_6

13_1_20CM_4_Bacteria_61_6
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.14 Longest contig: 9.28 Kbp Bin length: 5.76 Mbp GC content: 60.73 %
Contigs count: 3730 Features count: 6540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 5 / 55 MC: 1 BSCG 5 / 51 MC: 1 ASCG 2 / 38 MC: 1

Description

All Cyanos. <1 partial genome-CB

Displaying items 551-600 of 3730 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_150393
Species: Pyrinomonas methylaliphatogenes (50%)
2 1359 bp 55.63 4.62 83.44
13_1_20cm_4_scaffold_35156
Species: Rivularia sp. PCC 7116 (50%)
2 2536 bp 54.46 4.95 87.30
13_1_20cm_4_scaffold_168826
Species: Cellulomonas flavigena (50%)
2 1291 bp 60.96 7.00 93.42
13_1_20cm_4_scaffold_235872
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1088 bp 69.39 13.38 92.19
13_1_20cm_4_scaffold_63957
Species: Candidatus Accumulibacter sp. BA-92 (50%)
2 1965 bp 57.86 3.45 96.49
13_1_20cm_4_scaffold_78702
Species: Arthrospira sp. PCC 8005 (50%)
2 1798 bp 72.97 4.19 94.27
13_1_20cm_4_scaffold_78933
Species: Cyanothece sp. PCC 7425 (50%)
2 1796 bp 56.40 4.05 100.22
13_1_20cm_4_scaffold_204999
Species: RBG_16_Planctomycetes_64_12_curated (50%)
2 1179 bp 68.11 5.11 82.19
13_1_20cm_4_scaffold_21145
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)
2 3128 bp 58.50 4.57 50.54
13_1_20cm_4_scaffold_155001
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1341 bp 71.89 10.86 100.00
13_1_20cm_4_scaffold_92527
Species: Leptolyngbya sp. Heron Island J (50%)
2 1679 bp 54.79 7.77 71.65
13_1_20cm_4_scaffold_102470
Species: Xenococcus sp. PCC 7305 (50%)
2 1607 bp 53.14 9.06 83.63
13_1_20cm_4_scaffold_40687
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 3225 bp 54.42 14.40 85.30
13_1_20cm_4_scaffold_228961
Species: Nostoc punctiforme (50%)
2 1108 bp 67.60 3.40 74.46
13_1_20cm_4_scaffold_185415
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1237 bp 63.95 3.25 74.21
13_1_20cm_4_scaffold_255918
Species: GWF2_Verrucomicrobia_62_7_curated (50%)
2 1032 bp 57.27 2.43 100.00
13_1_20cm_4_scaffold_208917
Species: Gloeobacter kilaueensis (50%)
2 1167 bp 57.16 2.80 99.49
13_1_20cm_4_scaffold_90915
Species: R_Elusimicrobia_64_13 (50%)
2 1691 bp 74.63 8.61 98.99
13_1_20cm_4_scaffold_158690
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1327 bp 62.55 3.78 85.46
13_1_20cm_4_scaffold_218363
Species: Coleofasciculus chthonoplastes (50%)
2 1140 bp 65.79 7.05 87.89
13_1_20cm_4_scaffold_95985
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (100%)
2 1653 bp 70.96 16.40 100.00
13_1_20cm_4_scaffold_230112
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 1105 bp 61.00 12.72 83.89
13_1_20cm_4_scaffold_122286
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
2 1489 bp 68.50 5.39 93.49
13_1_20cm_4_scaffold_243037
Species: Nostoc punctiforme (50%)
2 1067 bp 58.39 5.65 101.50
13_1_20cm_4_scaffold_186338
Species: Anabaena cylindrica (50%)
2 1234 bp 50.81 4.07 85.58
13_1_20cm_4_scaffold_133576
Species: Acaryochloris marina (50%)
2 1432 bp 64.04 5.61 90.92
13_1_20cm_4_scaffold_252231
Species: RBG_13_Deltaproteobacteria_60_28_curated (50%)
2 1042 bp 57.10 3.85 91.55
13_1_20cm_4_scaffold_195785
Species: Leptolyngbya sp. PCC 7376 (50%)
2 1206 bp 57.38 3.33 101.49
13_1_20cm_4_scaffold_259144
Species: RLO_RIF_CHLX_71_12 (50%)
2 1023 bp 65.79 4.17 81.82
13_1_20cm_4_scaffold_78012
Species: Gloeobacter violaceus (50%)
2 1805 bp 57.01 4.59 100.22
13_1_20cm_4_scaffold_261909
Species: Rubidibacter lacunae (50%)
2 1016 bp 64.76 4.69 85.63
13_1_20cm_4_scaffold_42993
Species: RBG_16_Chloroflexi_57_11_curated (50%)
2 2329 bp 70.03 10.56 100.09
13_1_20cm_4_scaffold_231497
Species: Crinalium epipsammum (50%)
2 1101 bp 59.04 2.05 97.28
13_1_20cm_4_scaffold_192099
Species: Halothece sp. PCC 7418 (50%)
2 1217 bp 53.90 6.60 65.57
13_1_20cm_4_scaffold_196015
Species: Pyrinomonas methylaliphatogenes (50%)
2 1205 bp 55.68 4.79 100.33
13_1_20cm_4_scaffold_82392
Species: Candidatus Brocadia sinica (50%)
2 1764 bp 59.07 7.11 78.23
13_1_20cm_4_scaffold_148093
Species: CG_Mariprof_03 (50%)
2 1369 bp 65.01 3.67 87.87
13_1_20cm_4_scaffold_83544
Species: Gloeobacter kilaueensis (50%)
2 1754 bp 59.12 3.43 95.95
13_1_20cm_4_scaffold_210761
Species: Crinalium epipsammum (50%)
2 1162 bp 68.24 3.24 85.20
13_1_20cm_4_scaffold_164220
Species: bacterium UASB270 (50%)
2 1307 bp 64.19 14.60 41.78
13_1_20cm_4_scaffold_166064
Species: bacterium UASB270 (50%)
2 1300 bp 51.92 2.32 96.92
13_1_20cm_4_scaffold_241404
Species: RBG_13_Chloroflexi_50_21_curated (50%)
2 1072 bp 69.03 4.21 100.19
13_1_20cm_4_scaffold_190487
Species: marine sediment metagenome (50%)
2 1222 bp 62.44 3.29 86.17
13_1_20cm_4_scaffold_139107
Species: Microcoleus sp. PCC 7113 (50%)
2 1407 bp 57.85 5.53 91.90
13_1_20cm_4_scaffold_267672
Species: Mastigocladus laminosus (50%)
2 1001 bp 49.75 13.29 68.93
13_1_20cm_4_scaffold_210531
Species: Hassallia byssoidea (100%)
2 1163 bp 49.53 2.81 100.86
13_1_20cm_4_scaffold_34930
Species: RBG_16_Chloroflexi_54_18_curated (50%)
2 2543 bp 54.54 4.15 73.73
13_1_20cm_4_scaffold_46450
Species: Hassallia byssoidea (50%)
2 2255 bp 55.74 6.57 79.42
13_1_20cm_4_scaffold_181501
Species: RBG_16_NC10_65_8_curated (50%)
2 2741 bp 55.56 12.45 96.64
13_1_20cm_4_scaffold_190257
Species: Gloeobacter kilaueensis (50%)
2 1222 bp 69.97 3.90 83.96
Displaying items 551-600 of 3730 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.