ggKbase home page

13_1_40cm_4_scaffold_13137

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_13137_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..1111
DNA (1110bp) protein (370aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K1_GEMAT
13_1_40cm_4_scaffold_13137_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1134..1550
DNA (417bp) protein (139aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_13137_3
unknown

Not on your lists

1596..2639
DNA (1044bp) protein (348aa)

This feature has no annotations

13_1_40cm_4_scaffold_13137_4
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2671..3123
DNA (453bp) protein (151aa)
Rrf2 family DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4K0_GEMAT
Rrf2 family DNA-binding protein
Rrf2 family DNA-binding protein {ECO:0000313|EMBL:BAH39025.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (s
13_1_40cm_4_scaffold_13137_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

3120..4256
DNA (1137bp) protein (379aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF id=5224911 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UBA/THIF-type NAD/FAD binding domain-containing protein
13_1_40cm_4_scaffold_13137_trna_1
unknown

Not on your lists

comp(4258..4341)
DNA (84bp)
transferRNA
13_1_40cm_4_scaffold_13137_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4568..4846
DNA (279bp) protein (93aa)
SsrA-binding protein n=1 Tax=uncultured bacterium RepID=K2D4H4_9BACT
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_13137_7
unknown

Not on your lists

6006..7070
DNA (1065bp) protein (355aa)

This feature has no annotations

13_1_40cm_4_scaffold_13137_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

7067..7906
DNA (840bp) protein (280aa)
pyrD; dihydroorotate dehydrogenase (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Dihydroorotate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J6_GEMAT
Dihydroorotate dehydrogenase
13_1_40cm_4_scaffold_13137_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


9215..9598
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=2 Tax=Thermaerobacter RepID=E6SKX5_THEM7
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Gemmatimonadetes_66_8_curated
Ribosomal protein S13
13_1_40cm_4_scaffold_13137_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


9605..10075
DNA (471bp) protein (157aa)
30S ribosomal protein S11 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J2_GEMAT
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Gemmatimonadetes_66_8_curated
rpsK; 30S ribosomal protein S11
13_1_40cm_4_scaffold_13137_11
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


10242..10682
DNA (441bp) protein (147aa)
30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J1_GEMAT
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Gemmatimonadetes_66_8_curated
ribosomal protein S4
13_1_40cm_4_scaffold_13137_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

10679..11695
DNA (1017bp) protein (339aa)
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4J0_GEMAT
DNA-directed RNA polymerase subunit alpha
13_1_40cm_4_scaffold_13137_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


11695..12051
DNA (357bp) protein (119aa)
50S ribosomal protein L17 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL17_GEMAT
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RBG_16_Gemmatimonadetes_66_8_curated
50S ribosomal protein L17
13_1_40cm_4_scaffold_13137_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

12323..13099
DNA (777bp) protein (259aa)
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RBG_16_Gemmatimonadetes_66_8_curated
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A4I7_GEMAT
Displaying 15 items

View Taxonomy