ggKbase home page

13_1_40cm_4_scaffold_446

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_446_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

46..1440
DNA (1395bp) protein (465aa)
glnA; glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glutamine synthetase n=1 Tax=uncultured bacterium RepID=K2ESF8_9BACT
glutamine synthetase, type I
13_1_40cm_4_scaffold_446_2
Halomonas sp. R57-5, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1529..1897)
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Desulfitobacterium hafniense RepID=UPI00037C336F
Uncharacterized protein {ECO:0000313|EMBL:CEP36889.1}; TaxID=1610576 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. R57-5
hypothetical protein
13_1_40cm_4_scaffold_446_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1997..2500
DNA (504bp) protein (168aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_446_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

2484..4076
DNA (1593bp) protein (531aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative uncharacterized protein id=1705623 bin=GWB2_Elusimicrobium_63_22 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
hypothetical protein
13_1_40cm_4_scaffold_446_5
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4117..5238
DNA (1122bp) protein (374aa)
ser/threonine protein phosphatase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000347BE9E
Metallophosphoesterase {ECO:0000313|EMBL:EKS66993.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ
metallophosphoesterase
13_1_40cm_4_scaffold_446_6
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

5568..7124
DNA (1557bp) protein (519aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000
2-isopropylmalate synthase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SBS6_9BACT
leuA; 2-isopropylmalate synthase
13_1_40cm_4_scaffold_446_7
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

7129..8829
DNA (1701bp) protein (567aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; He
Acetolactate synthase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AZM7_HERA2
acetolactate synthase large subunit, biosynthetic type
13_1_40cm_4_scaffold_446_8
unknown

Not on your lists

8826..9110
DNA (285bp) protein (95aa)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
13_1_40cm_4_scaffold_446_9
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9107..13240
DNA (4134bp) protein (1378aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000255|HAMAP-Rule:MF_01026}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01026};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01026}; Short=IPMI {ECO:00
3-isopropylmalate dehydratase large subunit n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=LEUC_SYMTH
13_1_40cm_4_scaffold_446_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13249..14925)
DNA (1677bp) protein (559aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFJ4_9CYAN
13_1_40cm_4_scaffold_446_11
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(14934..15773)
DNA (840bp) protein (280aa)
prephenate dehydratase (EC:4.2.1.51)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003697C56
Prephenate dehydratase Tax=S_OP1_64_32
13_1_40cm_4_scaffold_446_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

15840..16502
DNA (663bp) protein (221aa)
TetR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE71_GEMAT
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:BAH40798.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auranti
13_1_40cm_4_scaffold_446_13
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16601..17962
DNA (1362bp) protein (454aa)
Outer membrane efflux protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE70_GEMAT
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:BAH40797.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (str
13_1_40cm_4_scaffold_446_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17986..19017
DNA (1032bp) protein (344aa)
Secretion protein HlyD family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE69_GEMAT
secretion protein HlyD family protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:BAH40796.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auranti
13_1_40cm_4_scaffold_446_15
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19014..22055
DNA (3042bp) protein (1014aa)
Multidrug resistance protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE68_GEMAT
Multidrug resistance protein {ECO:0000313|EMBL:BAH40795.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (stra
multidrug resistance protein
13_1_40cm_4_scaffold_446_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

22075..23037
DNA (963bp) protein (321aa)
putative Zn-dependent hydrolase of beta-lactamase fold protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
putative Zn-dependent hydrolase of beta-lactamase fold protein id=14625801 bin=bin7_NC10_sister species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Zn-dependent hydrolase of beta-lactamase fold protein
13_1_40cm_4_scaffold_446_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23090..23239
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWC3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91514.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
13_1_40cm_4_scaffold_446_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

23245..23700
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLJ5_9BACT
hypothetical protein Tax=RBG_13_Acidobacteria_68_16_curated
protein of unknown function DUF1211
13_1_40cm_4_scaffold_446_19
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23862..24986
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y0M5_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37725.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_4_scaffold_446_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

24998..25780
DNA (783bp) protein (261aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FWF0_STIAD
DNA-binding response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
LyTR family two component transcriptional regulator
13_1_40cm_4_scaffold_446_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

26132..29482
DNA (3351bp) protein (1117aa)
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHG90184.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
TonB-dependent receptor plug id=4687224 bin=GWC2_Ignavibacteria_38_9 species=Muricauda ruestringensis genus=Muricauda taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
13_1_40cm_4_scaffold_446_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

29500..30951
DNA (1452bp) protein (484aa)
SusD-like protein
SusD-like protein {ECO:0000313|EMBL:AHG90185.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein id=2752104 bin=GWF2_Melioribacter_38_21 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
13_1_40cm_4_scaffold_446_23
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31090..31533
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW94662.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_4_scaffold_446_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

31508..32551
DNA (1044bp) protein (348aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] id=24489205 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cytochrome c oxidase subunit II (EC:1.9.3.1)
13_1_40cm_4_scaffold_446_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

32548..34362
DNA (1815bp) protein (605aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=GWA2_Rokubacteria_70_23_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase subunit I id=4393250 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_446_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

34366..34950
DNA (585bp) protein (195aa)
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
ctaE; cytochrome c oxidase subunit III (EC:1.9.3.1)
Cytochrome c oxidase subunit III id=4393248 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_446_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

34947..35303
DNA (357bp) protein (119aa)
hypothetical protein id=24489208 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_4_scaffold_446_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

35300..36100
DNA (801bp) protein (267aa)
ctaG; putative CtaG protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
Putative CtaG protein id=4885219 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_446_29
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

36164..37072
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI00037308F6
Uncharacterized protein {ECO:0000313|EMBL:KIY12307.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
hypothetical protein
13_1_40cm_4_scaffold_446_30
unknown

Not on your lists

37473..38012
DNA (540bp) protein (180aa)

This feature has no annotations

Displaying items 1-30 of 43 in total

View Taxonomy