ggKbase home page

13_1_40cm_4_scaffold_715

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_715_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..380)
DNA (378bp) protein (126aa)
nucleotide-binding protein; K09767 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K09767 hypothetical protein id=14627979 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_715_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(416..1072)
DNA (657bp) protein (219aa)
Outer-membrane lipoprotein carrier protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Outer membrane lipoprotein carrier protein LolA id=4911887 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Outer-membrane lipoprotein carrier protein
13_1_40cm_4_scaffold_715_3
unknown

Not on your lists

1962..2393
DNA (432bp) protein (144aa)

This feature has no annotations

13_1_40cm_4_scaffold_715_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3880..5406)
DNA (1527bp) protein (509aa)
Oligopeptide ABC transpoter oligopeptide-binding protein id=4192679 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
oligopeptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_715_5
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5457..6416
DNA (960bp) protein (320aa)
immunogenic protein precursor n=1 Tax=Bradyrhizobium japonicum RepID=UPI000375C4A1
Immunogenic protein {ECO:0000313|EMBL:EJZ30760.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CC
immunogenic protein precursor
13_1_40cm_4_scaffold_715_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6475..6822)
DNA (348bp) protein (116aa)
UPF0060 membrane protein Csp_C23950 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCG6_9BURK
hypothetical protein; K09771 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein
13_1_40cm_4_scaffold_715_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6819..7175)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000346167F
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC93904.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
13_1_40cm_4_scaffold_715_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7218..7850
DNA (633bp) protein (211aa)
sigW1; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWC2_Rokubacteria_70_16_curated
ECF subfamily RNA polymerase sigma factor id=4878370 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_4_scaffold_715_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7847..8794
DNA (948bp) protein (316aa)
Putative uncharacterized protein id=4878369 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_715_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8948..10363
DNA (1416bp) protein (472aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4878368 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_715_11
unknown

Not on your lists

10411..10932
DNA (522bp) protein (174aa)

This feature has no annotations

13_1_40cm_4_scaffold_715_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10953..11477)
DNA (525bp) protein (175aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4984647 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_715_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11474..13657)
DNA (2184bp) protein (728aa)
cell division protein FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cell division protein id=4104868 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein
13_1_40cm_4_scaffold_715_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13657..15327)
DNA (1671bp) protein (557aa)
metallo-beta-lactamase superfamily hydrolase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease J 1 (RNase J1) id=2399877 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA-metabolising metallo-beta-lactamase
13_1_40cm_4_scaffold_715_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15418..16668)
DNA (1251bp) protein (417aa)
Peptidase M23B id=2399879 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative peptidase M23 family protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_715_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(16665..17450)
DNA (786bp) protein (262aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase A id=2399881 bin=GWA2_Methylomirabilis_73_35 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dimethyladenosine transferase
13_1_40cm_4_scaffold_715_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17437..18054)
DNA (618bp) protein (206aa)
dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dephospho-CoA kinase id=2399883 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dephospho-coenzyme A kinase
13_1_40cm_4_scaffold_715_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18072..20729)
DNA (2658bp) protein (886aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase I (EC:2.7.7.7)
DNA polymerase id=2399886 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_715_19
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20714..21589)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H6N9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV26278.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirill
13_1_40cm_4_scaffold_715_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21604..23091)
DNA (1488bp) protein (496aa)
glutamate-ammonia ligase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamate-ammonia-ligase adenylyltransferase id=4756405 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamate-ammonia-ligase adenylyltransferase
13_1_40cm_4_scaffold_715_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24755..25093)
DNA (339bp) protein (113aa)
glnB; nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nitrogen regulatory protein P-II id=4756404 bin=GWA2_Methylomirabilis_73_35 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnB; nitrogen regulatory protein P-II
13_1_40cm_4_scaffold_715_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25095..26702)
DNA (1608bp) protein (536aa)
Na/Pi-cotransporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Na/Pi-cotransporter II-related protein id=4082207 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Na/Pi-cotransporter
13_1_40cm_4_scaffold_715_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26699..27406)
DNA (708bp) protein (236aa)
Fructose-2,6-bisphosphatase id=4756401 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglycerate mutase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GpmB; fructose-2,6-bisphosphatase
13_1_40cm_4_scaffold_715_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27403..28821)
DNA (1419bp) protein (473aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate--tRNA ligase id=4756400 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA synthetase
13_1_40cm_4_scaffold_715_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(28937..30247)
DNA (1311bp) protein (437aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
nucleotide sugar dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Nucleotide-sugar dehydrogenase id=4811707 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_715_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(30244..31338)
DNA (1095bp) protein (365aa)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DegT/DnrJ/EryC1/StrS family protein id=14627076 bin=bin7_NC10_sister species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
13_1_40cm_4_scaffold_715_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(31335..33542)
DNA (2208bp) protein (736aa)
organic solvent tolerance protein; K04744 LPS-assembly protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance protein
13_1_40cm_4_scaffold_715_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(33563..34873)
DNA (1311bp) protein (437aa)
folyl-polyglutamate synthetase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FolC bifunctional protein id=4811710 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
13_1_40cm_4_scaffold_715_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(35037..35897)
DNA (861bp) protein (287aa)
accD; acetyl-Coa carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
accD; acetyl-CoA carboxylase carboxyltransferase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta id=4811711 bin=GWC2_Methylomirabilis_70_24 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_715_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(35995..36399)
DNA (405bp) protein (135aa)
tryptophan synthase subunit alpha; K01695 tryptophan synthase alpha chain [EC:4.2.1.20] Tax=GWA2_Rokubacteria_73_35_curated
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain id=4059711 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 30 items

View Taxonomy