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13_1_40cm_4_scaffold_1922

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1922_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1..183
DNA (183bp) protein (61aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_1922_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

180..1157
DNA (978bp) protein (326aa)
thiL; thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=GWC2_Gemmatimonadetes_71_10_curated
Thiamine-monophosphate kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7Y1_GEMAT
thiamine-monophosphate kinase
13_1_40cm_4_scaffold_1922_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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1154..1888
DNA (735bp) protein (245aa)
acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RBG_16_Gemmatimonadetes_66_8_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LIN1_SYNFM
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_4_scaffold_1922_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1902..3182
DNA (1281bp) protein (427aa)
eno; enolase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Enolase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=ENO_GEMAT
Enolase
13_1_40cm_4_scaffold_1922_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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3179..3472
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7Y4_GEMAT
Septum formation initiator Tax=GWC2_Gemmatimonadetes_71_10_curated
Septum formation initiator
13_1_40cm_4_scaffold_1922_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3503..5197)
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000377132B
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
protein kinase
13_1_40cm_4_scaffold_1922_trna_1
unknown

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5497..5570
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_1922_7
unknown

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5692..6348
DNA (657bp) protein (219aa)

This feature has no annotations

13_1_40cm_4_scaffold_1922_8
unknown

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comp(6844..9114)
DNA (2271bp) protein (757aa)

This feature has no annotations

13_1_40cm_4_scaffold_1922_9
unknown

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9192..9773
DNA (582bp) protein (194aa)

This feature has no annotations

13_1_40cm_4_scaffold_1922_10
RLO_PLX_64_10, Bacteria

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comp(9814..10287)
DNA (474bp) protein (158aa)
ketosteroid isomerase-like protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
ketosteroid isomerase-like protein id=24506738 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_1922_11
unknown

Not on your lists

10433..10975
DNA (543bp) protein (181aa)

This feature has no annotations

13_1_40cm_4_scaffold_1922_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(11033..11632)
DNA (600bp) protein (200aa)
flavin reductase-like domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein id=14424636 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
flavin oxidoreductase
13_1_40cm_4_scaffold_1922_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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11641..12999
DNA (1359bp) protein (453aa)
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
tRNA(Ile)-lysidine synthase id=4232765 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tRNA(Ile)-lysidine synthase
13_1_40cm_4_scaffold_1922_14
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

12959..13516
DNA (558bp) protein (186aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:BAH38434.1}; EC=2.4.2.8 {ECO:0000313|EMBL:BAH38434.1};; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae;
Hypoxanthine phosphoribosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A874_GEMAT
13_1_40cm_4_scaffold_1922_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

13517..15502
DNA (1986bp) protein (662aa)
ftsH; ATP-dependent protease FtsH (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A875_GEMAT
peptidase M41 FtsH domain protein
13_1_40cm_4_scaffold_1922_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

15567..16829
DNA (1263bp) protein (421aa)
Secretion protein HlyD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHN3_9BACT
RND family efflux pump membrane fusion protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
efflux transporter, RND family, MFP subunit
13_1_40cm_4_scaffold_1922_17
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

16862..17533
DNA (672bp) protein (224aa)
antimicrobial peptide ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein Tax=RBG_16_Actinobacteria_67_10_curated
ABC transporter related protein
ABC transporter related, ATP binding protein id=4880418 bin=GWC2_Ignavibacteria_56_12 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
13_1_40cm_4_scaffold_1922_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

17530..18672
DNA (1143bp) protein (381aa)
MacB-like periplasmic core domain protein
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:AHG93526.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein; K02004 putative ABC transport system permease protein id=24463454 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfovibrio sp. FW1012B genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_4_scaffold_1922_19
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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18669..19289
DNA (621bp) protein (207aa)
multidrug ABC transporter permease n=1 Tax=Cupriavidus sp. WS RepID=UPI000360B14B
permease Tax=RBG_16_Actinobacteria_67_10_curated
MacB-like periplasmic core domain protein
13_1_40cm_4_scaffold_1922_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19286..19783
DNA (498bp) protein (166aa)
lipoprotein release ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
MacB-like periplasmic core domain protein
ABC efflux pump, inner membrane subunit id=17104023 bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_4_scaffold_1922_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

19780..20943
DNA (1164bp) protein (388aa)
Dihydropteroate synthase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCU3_ANADF
dihydropteroate synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
dihydropteroate synthase
13_1_40cm_4_scaffold_1922_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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20940..21749
DNA (810bp) protein (270aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A876_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Conserved hypothetical protein CHP00159
13_1_40cm_4_scaffold_1922_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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21832..22521
DNA (690bp) protein (230aa)
Alanine racemase domain protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C303_SPHTD
alanine racemase domain-containing protein; K06997 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function UPF0001
13_1_40cm_4_scaffold_1922_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22518..23012
DNA (495bp) protein (165aa)
Septum site-determining protein DivIVA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A879_GEMAT
divIVA; septum site-determining protein DivIVA; K04074 cell division initiation protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function UPF0001
13_1_40cm_4_scaffold_1922_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

23009..23818
DNA (810bp) protein (270aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A880_GEMAT
13_1_40cm_4_scaffold_1922_26
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

23818..26976
DNA (3159bp) protein (1053aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A881_GEMAT
13_1_40cm_4_scaffold_1922_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

26976..27389
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A882_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_4_scaffold_1922_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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27373..27882
DNA (510bp) protein (170aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Lipoprotein signal peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A883_GEMAT
Lipoprotein signal peptidase
13_1_40cm_4_scaffold_1922_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

27879..28916
DNA (1038bp) protein (346aa)
rluD; ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A885_GEMAT
pseudouridine synthase, RluA family
Displaying items 1-30 of 33 in total

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