ggKbase home page

13_1_40cm_4_scaffold_2228

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2228_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1..315)
DNA (315bp) protein (105aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_2228_2
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(300..1013)
DNA (714bp) protein (238aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XAF2_9CLOT
13_1_40cm_4_scaffold_2228_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1028..2305)
DNA (1278bp) protein (426aa)
Peptidase M23B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8C2_GEMAT
peptidase M23B family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Peptidase M23
13_1_40cm_4_scaffold_2228_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(2305..3462)
DNA (1158bp) protein (386aa)
Cell division protein FtsZ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8C1_GEMAT
ftsZ; cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell division protein FtsZ
13_1_40cm_4_scaffold_2228_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3482..4738)
DNA (1257bp) protein (419aa)
Cell division protein ftsA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B3_GEMAT
ftsA; cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell division protein FtsA
13_1_40cm_4_scaffold_2228_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4735..5484)
DNA (750bp) protein (250aa)
Putative cell division protein FtsQ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B2_GEMAT
ftsQ; putative cell division protein FtsQ; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Polypeptide-transport-associated domain protein FtsQ-type
13_1_40cm_4_scaffold_2228_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(5481..6890)
DNA (1410bp) protein (470aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B1_GEMAT
UDP-N-acetylmuramate--L-alanine ligase
13_1_40cm_4_scaffold_2228_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6945..8036)
DNA (1092bp) protein (364aa)
murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8B0_GEMAT
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
13_1_40cm_4_scaffold_2228_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8170..8682)
DNA (513bp) protein (171aa)
Stage V sporulation protein E n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFT8_9FIRM
ftsW; cell division protein FtsW; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
cell cycle protein
13_1_40cm_4_scaffold_2228_10
unknown

Not on your lists

8728..9000
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_4_scaffold_2228_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9283..10638)
DNA (1356bp) protein (452aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=GWC2_Gemmatimonadetes_71_10_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A8_GEMAT
UDP-N-acetylmuramoylalanine--D-glutamate ligase
13_1_40cm_4_scaffold_2228_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(10635..11756)
DNA (1122bp) protein (374aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=MRAY_GEMAT
13_1_40cm_4_scaffold_2228_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11777..13117)
DNA (1341bp) protein (447aa)
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A6_GEMAT
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
13_1_40cm_4_scaffold_2228_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13236..14690)
DNA (1455bp) protein (485aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=GWC2_Gemmatimonad
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A5_GEMAT
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
13_1_40cm_4_scaffold_2228_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14687..16660)
DNA (1974bp) protein (658aa)
ftsI; cell division protein FtsI (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=GWC2_Gemmatimonadetes_71_10_curated
Cell division protein FtsI n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8A4_GEMAT
penicillin-binding protein transpeptidase
13_1_40cm_4_scaffold_2228_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16663..16953)
DNA (291bp) protein (97aa)
Cell division protein FtsL family protein Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_2228_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16943..17986)
DNA (1044bp) protein (348aa)
mraW; putative S-adenosyl-methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000255|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000255|HAMAP-Rule:MF_0100
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RSMH_GEMAT
13_1_40cm_4_scaffold_2228_trna_2
unknown

Not on your lists

comp(17937..18010)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_2228_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18061..19854)
DNA (1794bp) protein (598aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_2228_trna_1
unknown

Not on your lists

comp(19892..19966)
DNA (75bp)
transferRNA
13_1_40cm_4_scaffold_2228_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19983..20168)
DNA (186bp) protein (62aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_2228_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20203..21039)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A899_GEMAT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_2228_21
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21075..21938)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A898_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_2228_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21938..22414)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. 6_1_46AFAA RepID=G1UQ74_9DELT
cheW2; chemotaxis protein Chew Tax=GWC2_Gemmatimonadetes_71_10_curated
CheW protein
13_1_40cm_4_scaffold_2228_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(22411..22830)
DNA (420bp) protein (140aa)
CheW protein n=2 Tax=unclassified Opitutaceae RepID=H1IM48_9BACT
chemotaxis protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
chemotaxis protein CheW
13_1_40cm_4_scaffold_2228_24
Thermococcus nautili, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(22827..23852)
DNA (1026bp) protein (342aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=195522 species="Archaea; Euryarchaeota; Thermoco
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YX72_THEON
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
13_1_40cm_4_scaffold_2228_25
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23893..24390)
DNA (498bp) protein (166aa)
cheD; chemotaxis protein CheD; K03411 chemotaxis protein CheD [EC:3.5.1.44] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A895_GEMAT
cheD; chemotaxis protein CheD
13_1_40cm_4_scaffold_2228_26
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(24387..25211)
DNA (825bp) protein (275aa)
chemotaxis protein CheR (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] id=7201336 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal
MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal {ECO:0000313|EMBL:AHG90599.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_2228_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25208..26824)
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A894_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_2228_28
unknown

Not on your lists

27226..27825
DNA (600bp) protein (200aa)

This feature has no annotations

Displaying 30 items

View Taxonomy