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13_1_40cm_4_scaffold_1067

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1067_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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1..1110
DNA (1110bp) protein (370aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] id=14625051 bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=CSP1_6_Rokubacteria
citrate synthase (EC:2.3.3.1)
13_1_40cm_4_scaffold_1067_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1207..2346
DNA (1140bp) protein (380aa)
Oxidoreductase domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=3024538 bin=GWC2_Methylomirabilis_70_16 species=Tepidanaerobacter acetatoxydans genus=Tepidanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Oxidoreductase domain protein
13_1_40cm_4_scaffold_1067_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2343..2837
DNA (495bp) protein (165aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=GWC2_Rokubacteria_70_16_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=3024534 bin=GWC2_Methylomirabilis_70_16 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1067_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2834..3157
DNA (324bp) protein (108aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=GWC2_Rokubacteria_70_16_curated
Diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=3024534 bin=GWC2_Methylomirabilis_70_16 species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1067_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3154..3738
DNA (585bp) protein (195aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4379983 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1067_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3893..4303)
DNA (411bp) protein (137aa)
hypothetical protein id=3704167 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1067_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4347..4739
DNA (393bp) protein (131aa)
id=14627140 Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein id=3704168 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1067_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4761..6554
DNA (1794bp) protein (598aa)
Carbon starvation protein, predicted membrane protein id=3704169 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carbon starvation protein, predicted membrane protein Tax=GWA2_Rokubacteria_73_35_curated
carbon starvation protein CstA
13_1_40cm_4_scaffold_1067_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6633..6917
DNA (285bp) protein (95aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=3704170 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1067_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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6931..7212
DNA (282bp) protein (94aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Uncharacterized protein id=3704171 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1067_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7340..8188
DNA (849bp) protein (283aa)
arsenite-activated ATPase ArsA Tax=GWA2_Rokubacteria_70_23_curated
Arsenite-activated ATPase ArsA id=3704172 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsenite-activated ATPase ArsA
13_1_40cm_4_scaffold_1067_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8185..9117
DNA (933bp) protein (311aa)
Arsenite-activated ATPase ArsA id=3704173 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
arsenite-activated ATPase ArsA Tax=GWA2_Rokubacteria_73_35_curated
arsenite-activated ATPase ArsA
13_1_40cm_4_scaffold_1067_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9107..9580)
DNA (474bp) protein (158aa)
hypothetical protein n=2 Tax=unclassified candidate division EM 19 RepID=UPI00035C997E
5-formyltetrahydrofolate cyclo-ligase Tax=GWA2_Rokubacteria_70_23_curated
5-formyltetrahydrofolate cyclo-ligase
13_1_40cm_4_scaffold_1067_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10825..10974
DNA (150bp) protein (50aa)
aminoglycoside phosphotransferase; K06979 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aminoglycoside phosphotransferase id=4923991 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminoglycoside phosphotransferase
13_1_40cm_4_scaffold_1067_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11151..11924
DNA (774bp) protein (258aa)
5-oxoprolinase (ATP-hydrolyzing) id=4771371 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alpha/beta hydrolase fold protein Tax=GWA2_Rokubacteria_70_23_curated
alpha/beta hydrolase fold protein
13_1_40cm_4_scaffold_1067_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12532..13740)
DNA (1209bp) protein (403aa)
Putative acyl-CoA dehydrogenase id=3814357 bin=GWC2_Methylomirabilis_70_24 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative acyl-CoA dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
acyl-CoA dehydrogenase-like protein
13_1_40cm_4_scaffold_1067_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13752..14915)
DNA (1164bp) protein (388aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3024530 bin=GWC2_Methylomirabilis_70_16 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1067_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15002..16240
DNA (1239bp) protein (413aa)
Na+/H+ antiporter NhaD-like permease n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWQ1_9RHIZ
Na+/H+ antiporter NhaD-like permease {ECO:0000313|EMBL:EIM28393.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvi
citrate transporter
13_1_40cm_4_scaffold_1067_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16300..16854)
DNA (555bp) protein (185aa)
RNA-binding protein RNP-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNP-1 like RNA-binding protein id=1884756 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1-like RNA-binding protein
13_1_40cm_4_scaffold_1067_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16877..18610)
DNA (1734bp) protein (578aa)
phP C-terminal domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
PHP C-terminal domain protein id=4426899 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phP C-terminal domain-containing protein
13_1_40cm_4_scaffold_1067_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18622..18990
DNA (369bp) protein (123aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4379979 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1067_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19157..19339
DNA (183bp) protein (61aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4379977 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1067_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19336..20145
DNA (810bp) protein (270aa)
Periplasmic binding protein id=4379975 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_1067_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20276..22015)
DNA (1740bp) protein (580aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase id=4947485 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1067_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22049..22858)
DNA (810bp) protein (270aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) id=14626052 bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Displaying 25 items

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