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13_1_40cm_4_scaffold_1803

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1803_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..351)
DNA (351bp) protein (117aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ7_9BURK
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
inner-membrane translocator
13_1_40cm_4_scaffold_1803_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(382..861)
DNA (480bp) protein (160aa)
ABC transporter permease n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000311E8CB
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
extracellular ligand-binding receptor
13_1_40cm_4_scaffold_1803_3
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1077..1376
DNA (300bp) protein (100aa)
Uncharacterized protein (Fragment) n=1 Tax=Staphylococcus aureus subsp. aureus USA300_TCH959 RepID=C5N218_STAA3
Uncharacterized protein {ECO:0000313|EMBL:EES94147.1}; Flags: Fragment;; TaxID=450394 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus
13_1_40cm_4_scaffold_1803_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1567..2271)
DNA (705bp) protein (235aa)
histidinol dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F12605
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Betaproteobacteria_66_20_curated
ABC transporter-like protein
13_1_40cm_4_scaffold_1803_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2264..3016)
DNA (753bp) protein (251aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003645F11
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Betaproteobacteria_66_20_curated
ABC transporter
13_1_40cm_4_scaffold_1803_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3070..3804)
DNA (735bp) protein (245aa)
3-hydroxyacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyacyl-CoA dehydrogenase NAD-binding id=3880345 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_4_scaffold_1803_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3955..4884
DNA (930bp) protein (310aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI000311FED1
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
NMT1/THI5 like domain-containing protein
13_1_40cm_4_scaffold_1803_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4886..6232
DNA (1347bp) protein (449aa)
id=14627806 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_1803_9
unknown

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6608..7270
DNA (663bp) protein (221aa)

This feature has no annotations

13_1_40cm_4_scaffold_1803_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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comp(7272..8510)
DNA (1239bp) protein (413aa)
FAD dependent oxidoreductase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C862_SPHTD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACZ40005.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;"
13_1_40cm_4_scaffold_1803_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8560..10107
DNA (1548bp) protein (516aa)
Oligopeptide ABC transpoter oligopeptide-binding protein id=4192679 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
oligopeptide ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_1803_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10151..11227
DNA (1077bp) protein (359aa)
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein Tax=GWC2_Rokubacteria_70_16_curated
Binding-protein-dependent transport systems inner membrane component id=4192678 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
13_1_40cm_4_scaffold_1803_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11459..11899
DNA (441bp) protein (147aa)
gsiD; Oligopeptide ABC transporter permease protein; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Oligopeptide ABC transporter permease protein id=4192677 bin=GWF2_Methylomirabilis_70_14 species=Ketogulonicigenium vulgare genus=Ketogulonicigenium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
13_1_40cm_4_scaffold_1803_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11921..12670)
DNA (750bp) protein (250aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K66_MESSB
binding-protein-dependent transporters inner membrane component; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1803_15
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12667..13413)
DNA (747bp) protein (249aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K66_MESSB
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABG62209.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae
13_1_40cm_4_scaffold_1803_16
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(13410..14198)
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JS70_9PROT
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1803_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14240..15385)
DNA (1146bp) protein (382aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase id=2475803 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1803_18
RHI_OD1_Uhrbacteria_60_25, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15400..15570)
DNA (171bp) protein (57aa)
Tax=RIFCSPHIGHO2_12_FULL_OD1_Uhrbacteria_60_25_curated
13_1_40cm_4_scaffold_1803_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(15615..16019)
DNA (405bp) protein (135aa)
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=14626086 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
B12-binding protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
13_1_40cm_4_scaffold_1803_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16109..16537)
DNA (429bp) protein (143aa)
Histidine triad (HIT) protein id=2475799 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWC2_Rokubacteria_70_16_curated
HIT family hydrolase, diadenosine tetraphosphate hydrolase
13_1_40cm_4_scaffold_1803_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16542..17612)
DNA (1071bp) protein (357aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid transaminase id=4743718 bin=GWC2_Methylomirabilis_70_24 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_1803_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17626..19275)
DNA (1650bp) protein (550aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit id=3618738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1803_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19272..20420)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] id=14626083 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein; K00248 butyryl-CoA dehydrogenase [EC:1.3.8.1] Tax=CSP1_6_Rokubacteria
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_1803_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20420..21397)
DNA (978bp) protein (326aa)
etfA2; electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer flavoprotein, alpha subunit id=3618731 bin=GWF2_Methylomirabilis_70_14 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
etfA3; electron transfer flavoprotein subunit alpha
13_1_40cm_4_scaffold_1803_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22475..23206)
DNA (732bp) protein (244aa)
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator id=14626080 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
13_1_40cm_4_scaffold_1803_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23512..23700)
DNA (189bp) protein (63aa)
4-oxalocrotonate tautomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-] Tax=GWA2_Rokubacteria_73_35_curated
4-oxalocrotonate tautomerase id=4541114 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-oxalocrotonate tautomerase
13_1_40cm_4_scaffold_1803_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23842..24135
DNA (294bp) protein (98aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_1803_28
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(24132..24455)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IP06_NITGG
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_40cm_4_scaffold_1803_29
unknown

Not on your lists

comp(24452..24742)
DNA (291bp) protein (97aa)

This feature has no annotations

13_1_40cm_4_scaffold_1803_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24863..25645
DNA (783bp) protein (261aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR id=3352303 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobiaceae bacterium SG-6C genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fabG; 3-ketoacyl-ACP reductase Tax=GWA2_Rokubacteria_73_35_curated
Displaying items 1-30 of 51 in total

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