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13_1_40cm_4_scaffold_2087

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2087_1
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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3..884
DNA (882bp) protein (294aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW96729.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Nicotine dehydrogenase chain A id=1757934 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nicotine dehydrogenase chain A
13_1_40cm_4_scaffold_2087_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

881..1357
DNA (477bp) protein (159aa)
Carbon monoxide dehydrogenase subunit G id=1757932 bin=GWD2_Deltaproteobacteria_55_8 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
carbon monoxide dehydrogenase subunit G Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
carbon monoxide dehydrogenase subunit G
13_1_40cm_4_scaffold_2087_3
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

1354..2730
DNA (1377bp) protein (459aa)
ubiD_R; UbiD-like subunit of potential (de) carboxylase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
UbiD family decarboxylases id=2064952 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ubiD_R; UbiD-like subunit of potential (de) carboxylase
13_1_40cm_4_scaffold_2087_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2854..3096
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=unclassified candidate division OP9 RepID=UPI0003633562
SpoVT/AbrB domain-containing protein; K07172 antitoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SpoVT/AbrB domain-containing protein
13_1_40cm_4_scaffold_2087_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3096..3449
DNA (354bp) protein (118aa)
transcriptional modulator of MazE/toxin, MazF; K07171 mRNA interferase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Growth inhibitor n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D493_PELTS
MazF; growth inhibitor
13_1_40cm_4_scaffold_2087_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

3519..4139
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TLV3_DESML
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
transcriptional regulator, MerR
13_1_40cm_4_scaffold_2087_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4151..4876
DNA (726bp) protein (242aa)
Probable phenylacetic acid degradation protein paaA id=2043722 bin=GWD2_Deltaproteobacteria_55_8 species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phenylacetic acid degradation protein paaA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
phenylacetic acid degradation protein paaA
13_1_40cm_4_scaffold_2087_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4891..5091
DNA (201bp) protein (67aa)
id=2043724 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
id=2043724 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_2087_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5070..5867
DNA (798bp) protein (266aa)
electron transfer flavoprotein subunit alpha/beta; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Electron transfer flavoprotein alpha/beta-subunit id=2043725 bin=GWD2_Deltaproteobacteria_55_8 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Electron transfer flavoprotein alpha/beta-subunit
13_1_40cm_4_scaffold_2087_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5882..6850
DNA (969bp) protein (323aa)
Electron transfer flavoprotein alpha subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Electron transfer flavoprotein alpha subunit id=2043727 bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Electron transfer flavoprotein alpha subunit
13_1_40cm_4_scaffold_2087_11
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

Not on your lists

6850..7215
DNA (366bp) protein (122aa)
transport membrane protein Tax=RBG_13_Bathyarchaeota_52_12_curated
major facilitator transporter id=14628359 bin=bin8_Chloro species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
major facilitator superfamily transporter
13_1_40cm_4_scaffold_2087_12
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

7282..8106
DNA (825bp) protein (275aa)
Major facilitator superfamily MFS_1 id=3878088 bin=GWC2_Methylomirabilis_70_16 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
major facilitator transporter Tax=CSP1_4_Chloroflexi
major facilitator transporter
13_1_40cm_4_scaffold_2087_13
unknown

Not on your lists

comp(8249..8356)
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_2087_14
unknown

Not on your lists

comp(8498..8797)
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_4_scaffold_2087_15
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

8991..10661
DNA (1671bp) protein (557aa)
putative sensor protein PilS (EC:2.7.13.3); K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
Signal transduction histidine kinase id=1891807 bin=GWA2_Elusimicrobia_69_24 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_2087_16
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

10658..11998
DNA (1341bp) protein (447aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HHY4_ANADF
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RBG_16_NC10_65_8_curated
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_4_scaffold_2087_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12207..12935
DNA (729bp) protein (243aa)
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWA2_Rokubacteria_70_23_curated
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_4_scaffold_2087_18
unknown

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12970..13224
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_4_scaffold_2087_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13242..14078)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Bacillus fordii RepID=UPI00037AA3E7
nitrate transporter protein CmpC; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
nitrate/sulfonate/bicarbonate ABC transporter ATPase
13_1_40cm_4_scaffold_2087_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14088..14927)
DNA (840bp) protein (280aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXN0_9SYNE
nitrate/sulfonate/bicarbonate ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_4_scaffold_2087_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14937..15773)
DNA (837bp) protein (279aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SXN0_9SYNE
nitrate/sulfonate/bicarbonate ABC transporter permease Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_4_scaffold_2087_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15770..16354)
DNA (585bp) protein (195aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=1782162 bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_2087_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16661..16915)
DNA (255bp) protein (85aa)
vdcc protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Carboxylyase-related protein id=2018825 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
13_1_40cm_4_scaffold_2087_24
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16873..18276)
DNA (1404bp) protein (468aa)
Carboxylyase-related protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CPA2_9BURK
vdcc protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
Vdcc protein
13_1_40cm_4_scaffold_2087_25
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18276..18515)
DNA (240bp) protein (80aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WPX7_9EURY
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EUA32564.1}; TaxID=1299329 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium com
Displaying 25 items

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