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13_1_40cm_4_scaffold_2341

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2341_1
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..264
DNA (264bp) protein (88aa)
Strain MEJ086 contig_125, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87862.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomona
response regulator receiver protein
13_1_40cm_4_scaffold_2341_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(274..546)
DNA (273bp) protein (91aa)
pat; N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_70_23_curated
GCN5-related N-acetyltransferase id=4689036 bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
N-acetyltransferase GCN5
13_1_40cm_4_scaffold_2341_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(780..1574)
DNA (795bp) protein (265aa)
paaG; enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA hydratase id=1746157 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
paaG; enoyl-CoA hydratase
13_1_40cm_4_scaffold_2341_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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1635..2084
DNA (450bp) protein (150aa)
id=14625257 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14625257 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_2341_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2241..3365)
DNA (1125bp) protein (375aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidoglycan-associated lipoprotein id=2546000 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidoglycan-associated lipoprotein
13_1_40cm_4_scaffold_2341_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(3633..4142)
DNA (510bp) protein (170aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA id=3784124 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K07025 putative hydrolase of the HAD superfamily Tax=GWC2_Rokubacteria_70_16_curated
putative hydrolase
13_1_40cm_4_scaffold_2341_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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4972..5742
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036BA46E
Uncharacterized protein {ECO:0000313|EMBL:ETW93960.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_1_40cm_4_scaffold_2341_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6136..6693
DNA (558bp) protein (186aa)
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ECF subfamily RNA polymerase sigma factor id=4878370 bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF family RNA polymerase sigma factor
13_1_40cm_4_scaffold_2341_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6690..7586
DNA (897bp) protein (299aa)
Putative uncharacterized protein id=4878369 bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_2341_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7673..8707
DNA (1035bp) protein (345aa)
hypothetical protein id=14625992 bin=bin7_NC10_sister species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_2341_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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8723..9826
DNA (1104bp) protein (368aa)
Uncharacterized protein id=4217956 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_2341_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9851..10378
DNA (528bp) protein (176aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4029898 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_4_scaffold_2341_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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10375..11346
DNA (972bp) protein (324aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methylated-DNA--protein-cysteine methyltransferase id=4554993 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase
13_1_40cm_4_scaffold_2341_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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11414..11779
DNA (366bp) protein (122aa)
id=4554997 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4554997 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2341_15
unknown

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12313..12510
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_4_scaffold_2341_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(12491..12751)
DNA (261bp) protein (87aa)
Peroxiredoxin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Peroxiredoxin id=2306567 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Peroxiredoxin
13_1_40cm_4_scaffold_2341_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12893..13141)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW92744.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Putative alkyl hydroperoxide reductase id=2306568 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. GXF4 genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2341_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13179..13550)
DNA (372bp) protein (124aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter related id=4427438 bin=GWC2_Methylomirabilis_70_24 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter-like protein
13_1_40cm_4_scaffold_2341_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13848..14045)
DNA (198bp) protein (66aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein id=4427436 bin=GWC2_Methylomirabilis_70_24 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
livG; branched-chain amino acid ABC transporter ATPase
13_1_40cm_4_scaffold_2341_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14561..15502)
DNA (942bp) protein (314aa)
livM; putative ABC transport system, membrane protein id=14627651 bin=bin7_NC10_sister species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
livM; putative ABC transport system, membrane protein Tax=CSP1_6_Rokubacteria
livM; putative ABC transport system, membrane protein
13_1_40cm_4_scaffold_2341_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15499..16362)
DNA (864bp) protein (288aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Inner-membrane translocator id=2845224 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
13_1_40cm_4_scaffold_2341_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16501..17721)
DNA (1221bp) protein (407aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein id=14627653 bin=bin7_NC10_sister species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_2341_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(17813..18916)
DNA (1104bp) protein (368aa)
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] id=14627216 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] Tax=CSP1_6_Rokubacteria
alcohol dehydrogenase class III
13_1_40cm_4_scaffold_2341_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18913..19752)
DNA (840bp) protein (280aa)
Alpha/beta hydrolase fold family protein 8 id=3868196 bin=GWC2_Methylomirabilis_70_24 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alpha/beta hydrolase fold protein Tax=GWC2_Rokubacteria_70_16_curated
alpha/beta fold family hydrolase
13_1_40cm_4_scaffold_2341_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19767..20801)
DNA (1035bp) protein (345aa)
major facilitator superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
Major facilitator superfamily MFS_1 transporter id=4930061 bin=GWA2_Methylomirabilis_73_35 species=Sporosarcina newyorkensis genus=Sporosarcina taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily protein
13_1_40cm_4_scaffold_2341_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20921..21397)
DNA (477bp) protein (159aa)
id=14627881 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627881 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2341_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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21499..22110
DNA (612bp) protein (204aa)
XRE family transcriptional regulator id=14627854 bin=bin7_NC10_sister species=Brevibacillus panacihumi genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
XRE family transcriptional regulator Tax=CSP1_6_Rokubacteria
XRE family transcriptional regulator
13_1_40cm_4_scaffold_2341_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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22100..22369
DNA (270bp) protein (90aa)
elongation factor Tu domain 2 protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative elongation factor Tu domain 2 id=2259314 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Translation elongation factor-like protein
13_1_40cm_4_scaffold_2341_29
unknown

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comp(22382..22603)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_4_scaffold_2341_30
unknown

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comp(22600..22962)
DNA (363bp) protein (121aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

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