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13_1_40cm_4_scaffold_262

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_262_1
unknown

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comp(1..75)
DNA (75bp) protein (25aa)

This feature has no annotations

13_1_40cm_4_scaffold_262_2
RLO_PLX_64_10, Bacteria

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545..2242
DNA (1698bp) protein (566aa)
Ammonium transporter n=1 Tax=Desulfovibrio sp. X2 RepID=S7TI48_9DELT
ammonium transporter; K03320 ammonium transporter, Amt family Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
ammonium transporter
13_1_40cm_4_scaffold_262_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2251..3495
DNA (1245bp) protein (415aa)
Uncharacterized protein id=4040233 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_262_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3503..3838
DNA (336bp) protein (112aa)
Two component, sigma54 specific, Fis family transcriptional regulator id=4040234 bin=GWA2_Methylomirabilis_73_35 species=Novosphingobium nitrogenifigens genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component sigma-54 specific Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWA2_Rokubacteria_73_35_curated
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG)
13_1_40cm_4_scaffold_262_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3876..5258)
DNA (1383bp) protein (461aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1767173 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
13_1_40cm_4_scaffold_262_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5255..6763)
DNA (1509bp) protein (503aa)
signal transduction histidine kinase NtrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Signal transduction histidine kinase, nitrogen specific, NtrB id=1767175 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_262_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(7041..7382)
DNA (342bp) protein (114aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_262_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7406..8920)
DNA (1515bp) protein (505aa)
putative two-component histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine kinase id=1767179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_262_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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9237..10205
DNA (969bp) protein (323aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=3763002 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein Tax=GWA2_Rokubacteria_73_35_curated
luciferase family protein
13_1_40cm_4_scaffold_262_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10202..11347
DNA (1146bp) protein (382aa)
cofG; FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-] Tax=GWA2_Rokubacteria_73_35_curated
FO synthase subunit 1 id=3763000 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cofG; FO synthase subunit 1
13_1_40cm_4_scaffold_262_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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11325..12590
DNA (1266bp) protein (422aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 id=3762998 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_262_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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12660..12947
DNA (288bp) protein (96aa)
Transcriptional dual regulator HU-beta id=4828265 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hupB; transcriptional dual regulator HU-beta; K03530 DNA-binding protein HU-beta Tax=GWC2_Rokubacteria_70_16_curated
hupB; transcriptional dual regulator HU-beta
13_1_40cm_4_scaffold_262_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12934..13530
DNA (597bp) protein (199aa)
hypothetical protein id=2338861 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_262_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13536..14465
DNA (930bp) protein (310aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=GWA2_Rokubacteria_73_35_curated
2-phospho-L-lactate transferase (EC:2.7.1.-)
2-phospho-L-lactate transferase id=2615052 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_262_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14462..15196
DNA (735bp) protein (245aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-phospho-L-lactate guanylyltransferase id=2615049 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2-phospho-L-lactate guanylyltransferase
13_1_40cm_4_scaffold_262_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15201..15950
DNA (750bp) protein (250aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] id=14628085 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
F420-dependent oxidoreductase
13_1_40cm_4_scaffold_262_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15955..16599
DNA (645bp) protein (215aa)
NADPH-dependent F420 reductase; K06988 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADPH-dependent F420 reductase id=2338864 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADPH-dependent F420 reductase
13_1_40cm_4_scaffold_262_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16627..17175
DNA (549bp) protein (183aa)
malate dehydrogenase (EC:1.1.1.37)
malate/L-lactate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Malate/L-lactate dehydrogenase id=2338865 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_262_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17138..17584)
DNA (447bp) protein (149aa)
hypothetical protein id=2338870 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
copper resistance protein CopC; K14166 copper transport protein
13_1_40cm_4_scaffold_262_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17581..18270)
DNA (690bp) protein (230aa)
Hydrolase, haloacid dehalogenase-like family id=2338871 bin=GWA2_Methylomirabilis_73_35 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloacid dehalogenase domain-containing protein hydrolase Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
Displaying 20 items

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