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13_1_40cm_4_scaffold_3809

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3809_1
unknown

Not on your lists

comp(56..277)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_4_scaffold_3809_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(850..3930)
DNA (3081bp) protein (1027aa)
glutamate-ammonia ligase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamate-ammonia-ligase adenylyltransferase id=3240703 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamate-ammonia-ligase adenylyltransferase
13_1_40cm_4_scaffold_3809_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3996..4334)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II id=4756404 bin=GWA2_Methylomirabilis_73_35 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnB; nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=GWA2_Rokubacteria_73_35_curated
glnB; nitrogen regulatory protein P-II
13_1_40cm_4_scaffold_3809_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4336..5943)
DNA (1608bp) protein (536aa)
Na/Pi-cotransporter II-like protein; K03324 phosphate:Na+ symporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Na/Pi-cotransporter II-related protein id=3240695 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Na/Pi-cotransporter II-like protein
13_1_40cm_4_scaffold_3809_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5940..6572)
DNA (633bp) protein (211aa)
GpmB; fructose-2,6-bisphosphatase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWA2_Rokubacteria_73_35_curated
Fructose-2,6-bisphosphatase id=4756401 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglycerate mutase
13_1_40cm_4_scaffold_3809_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6569..7993)
DNA (1425bp) protein (475aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate--tRNA ligase id=4756400 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA synthetase
13_1_40cm_4_scaffold_3809_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8026..8397)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEF1_THEPS
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3809_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9106..11277)
DNA (2172bp) protein (724aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
Nucleotide-sugar dehydrogenase id=4811707 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nucleotide-sugar dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_3809_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11447..12622)
DNA (1176bp) protein (392aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DegT/DnrJ/EryC1/StrS family protein id=14627076 bin=bin7_NC10_sister species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3809_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12619..13467)
DNA (849bp) protein (283aa)
organic solvent tolerance protein; K04744 LPS-assembly protein Tax=CSP1_6_Rokubacteria
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3809_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13470..14816)
DNA (1347bp) protein (449aa)
lptD; lipopolysaccharide biogenesis outer membrane protein LptD; K04744 LPS-assembly protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance protein
13_1_40cm_4_scaffold_3809_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14803..16131)
DNA (1329bp) protein (443aa)
folyl-polyglutamate synthetase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FolC bifunctional protein id=4811710 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
13_1_40cm_4_scaffold_3809_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16128..16988)
DNA (861bp) protein (287aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] id=14627079 bin=bin7_NC10_sister species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] Tax=CSP1_6_Rokubacteria
acetyl-CoA carboxyl transferase
Displaying 13 items

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