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13_1_20cm_3_scaffold_98_21

Organism: 13_1_20CM_3_Actinobacteria_71_11

partial RP 40 / 55 MC: 3 BSCG 35 / 51 MC: 4 ASCG 12 / 38 MC: 5
Location: comp(23338..24513)

Top 3 Functional Annotations

Value Algorithm Source
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=GWC2_RIF_CHLX_73_18_curated UNIPROT
DB: UniProtKB
  • Identity: 46.4
  • Coverage: 362.0
  • Bit_score: 329
  • Evalue 6.60e-87
Type IV pilus assembly protein PilC id=4832832 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 46.0
  • Coverage: 367.0
  • Bit_score: 329
  • Evalue 6.10e-87
type IV pilus assembly protein PilC similarity KEGG
DB: KEGG
  • Identity: 40.2
  • Coverage: 381.0
  • Bit_score: 289
  • Evalue 1.50e-75

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Taxonomy

GWC2_RIF_CHLX_73_18_curated → RIF-CHLX → Bacteria

Sequences

DNA sequence
Length: 1176
GTGCTCGAGGACAAGCTCACAGACGCTCCGTCGGCCTCCGCCGTGCACCGCGACCTGACACGCAAAGGGTATCGCGTGGTCTCGGTGCGGCCGGCGCGAGGAGGCTGGCAGTGGATCTACCGCCAGATGCCGACATTCTTCGGCGTCACCACCAGCGACCTGGTCCTCTTCTCGCGCCAGCTCTCGACATTCTTGAAGGTCGGCGTGCCCATCACCGAGGCCATCCGGCTGCTGCGCGGCGGCACCAGGTCGGGTCCCTTCAAGGCCGCTCTGGACGACATCAACTCCGATCTCGACGACGGTGAATCGTTCTCGGTGGCGATCTCCCATCACCCGAACGTGTTCAGCCAGCTGTACGTGGACATGGTGCGGGCGGCGGAGTACAGCGGAAGCCTGGATCGCGTGCTCCTCCAGATCGCGATCTACCTGCAGCGCCAGGACACGGCGATCAAGAAGATCCGAAGCGCCATGATCTATCCAGCGATCATCCTTACTCTCGCAGTCGCTGTCTGCGGAGTGCTGATCGTGGTCGTGCTTCCGAACTTCGTGGCGCTCTTCAACGAGTTCCACGCAGAGCTCCCTCTGCCGACGAGAATCTTGATCGCGATCGGTTCGTTCGCCCAGATCTGGCGGCTGCAGATCGTCGCGGGAGCCTTGATCACGATCTTTGCGGTTTTCGGCTTCCTGCAGACGGGGCCAGGTCGAGTGTTTTGGGATCACGCCCTGATCCGCCTCCCTGTGCTGGGCACGATCGTGGTGTTCGCCATCGTCGAGCGGTTCACCAGAACCCTTGCGACCATGCTGCGCGCCGGCATCCCCATCAGCCAGACATTCGATGTGGCGAGCGCGTCGGCCGGCAACATCCGCTACCGCCGGCAGCTCGAGGCGGTGCGTCTGCGGATGGTCACTGGCGATGGATTCTCAGAACCGCTCGCCGCGACCGGGCTCTTCGCGCCGATGGTCATCCGCATGGTCAAGGTCGGCGAAGAGACGGGCACCCTCGACCAGAGCCTGGAGCAAATCGCCGACTTCCTCGCAGAAGAGATGGACTACAAGGTCCGCAACATGATCGCGCTTATGGAGCCAGGACTCGTGATAGCGGTCGGGGCAGCGGTCGGCTTCGTCGCGGTGTCGGTGGTCCTGCCCATGTACGGGCTTCTCAGAGCGGTTCACTGA
PROTEIN sequence
Length: 392
VLEDKLTDAPSASAVHRDLTRKGYRVVSVRPARGGWQWIYRQMPTFFGVTTSDLVLFSRQLSTFLKVGVPITEAIRLLRGGTRSGPFKAALDDINSDLDDGESFSVAISHHPNVFSQLYVDMVRAAEYSGSLDRVLLQIAIYLQRQDTAIKKIRSAMIYPAIILTLAVAVCGVLIVVVLPNFVALFNEFHAELPLPTRILIAIGSFAQIWRLQIVAGALITIFAVFGFLQTGPGRVFWDHALIRLPVLGTIVVFAIVERFTRTLATMLRAGIPISQTFDVASASAGNIRYRRQLEAVRLRMVTGDGFSEPLAATGLFAPMVIRMVKVGEETGTLDQSLEQIADFLAEEMDYKVRNMIALMEPGLVIAVGAAVGFVAVSVVLPMYGLLRAVH*