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13_1_20cm_3_scaffold_2000

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_2000_1
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(3..1610)
DNA (1608bp) protein (536aa)
ASPIC/UnbV domain protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X6A8_ACISM
ASPIC/UnbV domain protein {ECO:0000313|EMBL:ADW70992.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain AT
ASPIC/UnbV domain-containing protein
13_1_20cm_3_scaffold_2000_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1906..2640
DNA (735bp) protein (245aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84115.1}; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitr
13_1_20cm_3_scaffold_2000_3
Bacteriovorax sp. BSW11_IV, Bacteriovorax, Bdellovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2953..4179)
DNA (1227bp) protein (409aa)
HD domain protein n=1 Tax=Bacteriovorax sp. BSW11_IV RepID=T0RRX3_9DELT
HD domain protein {ECO:0000313|EMBL:EQC49586.1}; TaxID=1353529 species="Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax.;" source="Bacteriovorax sp.
putative signaling protein
13_1_20cm_3_scaffold_2000_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(4367..4999)
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G3_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ABJ84426.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
hypothetical protein
13_1_20cm_3_scaffold_2000_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(5115..8000)
DNA (2886bp) protein (962aa)
TPR repeat-containing protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022I9_SOLUE rbh
TPR repeat-containing protein {ECO:0000313|EMBL:ABJ84111.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter u
hypothetical protein
13_1_20cm_3_scaffold_2000_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(8000..8593)
DNA (594bp) protein (198aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G1_SOLUE
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABJ84428.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" so
ECF subfamily RNA polymerase sigma-24 factor
13_1_20cm_3_scaffold_2000_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(8590..10386)
DNA (1797bp) protein (599aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021G0_SOLUE rbh
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABJ84429.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatu
extracellular solute-binding protein
13_1_20cm_3_scaffold_2000_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(10383..11075)
DNA (693bp) protein (231aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021F9_SOLUE
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABJ84430.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Soli
binding-protein-dependent transporter inner membrane component
13_1_20cm_3_scaffold_2000_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(11430..12404)
DNA (975bp) protein (325aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021F8_SOLUE
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABJ84431.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Soli
binding-protein-dependent transporter inner membrane component
13_1_20cm_3_scaffold_2000_10
Pseudanabaena sp. PCC 7367, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(12404..13264)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037A4910
ABC transporter related protein {ECO:0000313|EMBL:AFY70750.1}; TaxID=82654 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena sp. PCC 7367
ABC transporter ATP-binding protein
13_1_20cm_3_scaffold_2000_11
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

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comp(13233..14216)
DNA (984bp) protein (328aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q3H7_9FIRM
putative ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
oligopeptide/dipeptide ABC transporter ATPase
13_1_20cm_3_scaffold_2000_12
unknown

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comp(14489..14926)
DNA (438bp) protein (146aa)

This feature has no annotations

13_1_20cm_3_scaffold_2000_13
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15293..16861)
DNA (1569bp) protein (523aa)
Putative glucose dehydrogenase subunit alpha n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UHK9_ADVKW
Putative glucose dehydrogenase subunit alpha {ECO:0000313|EMBL:AFK64497.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella ka
putative glucose dehydrogenase subunit alpha
13_1_20cm_3_scaffold_2000_14
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16880..17434)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Pseudomonas psychrophila RepID=UPI0002FDA644
Putative uncharacterized protein {ECO:0000313|EMBL:EHR72798.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
13_1_20cm_3_scaffold_2000_15
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17489..19105)
DNA (1617bp) protein (539aa)
Thiamine pyrophosphate enzyme-like TPP binding region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVS4_RUBXD
Thiamine pyrophosphate enzyme-like TPP binding region {ECO:0000313|EMBL:ABG04504.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae;
thiamine pyrophosphate enzyme-like TPP binding region
13_1_20cm_3_scaffold_2000_16
unknown

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comp(19516..20424)
DNA (909bp) protein (303aa)

This feature has no annotations

13_1_20cm_3_scaffold_2000_17
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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20803..22239
DNA (1437bp) protein (479aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
Cation/multidrug efflux pump id=4778999 bin=GWA2_OP3_52_12 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
cation/multidrug efflux pump
Displaying 17 items

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