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13_1_20cm_4_scaffold_5293

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_5293_1
unknown

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3..530
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_20cm_4_scaffold_5293_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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553..879
DNA (327bp) protein (109aa)
Transcriptional regulator, ArsR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFR0_9BACT
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEF61424.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.
bacterial regulatory , arsR family protein
13_1_20cm_4_scaffold_5293_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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890..1357
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000380F998
Uncharacterized protein {ECO:0000313|EMBL:AGA30518.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera aci
hypothetical protein
13_1_20cm_4_scaffold_5293_4
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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1499..1954
DNA (456bp) protein (152aa)
transposase Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
Transposase id=4449892 bin=GWC2_Ignavibacteria_56_12 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
transposase
13_1_20cm_4_scaffold_5293_5
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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2181..2528
DNA (348bp) protein (116aa)
Integral membrane protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F848_SACEN
Membrane protein {ECO:0000313|EMBL:EQD86106.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
hypothetical protein
13_1_20cm_4_scaffold_5293_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2734..3210
DNA (477bp) protein (159aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; So
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GTW2_SORC5
hypothetical protein
13_1_20cm_4_scaffold_5293_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3248..3616
DNA (369bp) protein (123aa)
DGPFAETKE family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUJ8_9BACT
DGPFAETKE family protein {ECO:0000313|EMBL:EDY22236.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
YCII-like domain-containing protein
13_1_20cm_4_scaffold_5293_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3613..4854
DNA (1242bp) protein (414aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB96_9BACT rbh
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EDY16284.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus
putative RNA polymerase sigma factor containing a TPR repeat domain
13_1_20cm_4_scaffold_5293_9
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4927..5310
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037834DF
Uncharacterized protein {ECO:0000313|EMBL:KBZ61902.1}; TaxID=1324261 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source
hypothetical protein
13_1_20cm_4_scaffold_5293_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5348..6934
DNA (1587bp) protein (529aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4996869 bin=GWA2_Methylomirabilis_73_35 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_5293_11
Chloroherpeton thalassium, Chloroherpeton, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(6993..8315)
DNA (1323bp) protein (441aa)
Alpha amylase catalytic region n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QX65_CHLT3 rbh
Alpha amylase catalytic region {ECO:0000313|EMBL:ACF14875.1}; TaxID=517418 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chloroherpeton.;" source="Chloroherpeton thalassium (str
alpha-amylase
13_1_20cm_4_scaffold_5293_12
unknown

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8478..8801
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_20cm_4_scaffold_5293_13
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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9163..10716
DNA (1554bp) protein (518aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E3A0_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHN11850.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter me
phosphatase-like protein
Displaying 13 items

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