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13_1_20cm_4_scaffold_134

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_134_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..961)
DNA (960bp) protein (320aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutL id=4941257 bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
mutL; DNA mismatch repair protein
13_1_20cm_4_scaffold_134_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1038..3644)
DNA (2607bp) protein (869aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutS
13_1_20cm_4_scaffold_134_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3667..4122)
DNA (456bp) protein (152aa)
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
13_1_20cm_4_scaffold_134_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4166..4441)
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupA1; DNA-binding protein HU 1
13_1_20cm_4_scaffold_134_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4728..5597)
DNA (870bp) protein (290aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Peptidase S49, putative signal peptide peptidase SppA id=4143290 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_134_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(5617..7185)
DNA (1569bp) protein (523aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpsA; 30S ribosomal protein S1 id=14627234 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_20cm_4_scaffold_134_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7351..7800)
DNA (450bp) protein (150aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51)
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_134_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7993..8706)
DNA (714bp) protein (238aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=4430859 bin=GWC2_Methylomirabilis_70_24 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_134_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8703..10016)
DNA (1314bp) protein (438aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] id=14627231 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
3-phosphoshikimate 1-carboxyvinyltransferase
13_1_20cm_4_scaffold_134_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10013..10861)
DNA (849bp) protein (283aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] id=14627230 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
prephenate dehydrogenase
13_1_20cm_4_scaffold_134_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10858..11970)
DNA (1113bp) protein (371aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase id=4143296 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_134_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11980..13041)
DNA (1062bp) protein (354aa)
pheA; chorismate mutase/prephenate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chorismate mutase/prephenate dehydratase id=3333763 bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
pheA; chorismate mutase/prephenate dehydratase
13_1_20cm_4_scaffold_134_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13111..13755)
DNA (645bp) protein (215aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Pseudouridine synthase id=3333767 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
13_1_20cm_4_scaffold_134_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13793..14392)
DNA (600bp) protein (200aa)
scpB; Segregation and condensation protein B Tax=GWA2_Rokubacteria_73_35_curated
Segregation and condensation protein B id=3333773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
scpB; Segregation and condensation protein B
13_1_20cm_4_scaffold_134_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(14376..15149)
DNA (774bp) protein (258aa)
segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=3333777 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
chromosome segregation and condensation protein ScpA
13_1_20cm_4_scaffold_134_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15146..16135)
DNA (990bp) protein (330aa)
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) id=3333940 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_134_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16135..16890)
DNA (756bp) protein (252aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase family 2 id=3333943 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase
13_1_20cm_4_scaffold_134_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17057..17668)
DNA (612bp) protein (204aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] Tax=GWA2_Rokubacteria_73_35_curated
Glycosyl transferase, family 9 id=3333945 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_20cm_4_scaffold_134_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18023..18487)
DNA (465bp) protein (155aa)
cytidyltransferase-related domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytidyltransferase-related domain protein id=3333947 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytidyltransferase-related domain-containing protein
13_1_20cm_4_scaffold_134_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18498..19508)
DNA (1011bp) protein (337aa)
D-beta-D-heptose 7-phosphate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PfkB domain protein id=3956926 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-beta-D-heptose 7-phosphate kinase
13_1_20cm_4_scaffold_134_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19505..19939)
DNA (435bp) protein (145aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=GWA2_Rokubacteria_73_35
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase id=3956928 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_134_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19963..21090)
DNA (1128bp) protein (376aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=3956931 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
glycosyl transferase, group 1
13_1_20cm_4_scaffold_134_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21283..22413)
DNA (1131bp) protein (377aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=3956935 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Glycosyl transferase, group 1
13_1_20cm_4_scaffold_134_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22410..23534)
DNA (1125bp) protein (375aa)
putative phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Phosphatidylinositol alpha-mannosyltransferase id=3956937 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
group 1 glycosyl transferase
13_1_20cm_4_scaffold_134_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23531..24637)
DNA (1107bp) protein (369aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=3956940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
group 1 glycosyl transferase
13_1_20cm_4_scaffold_134_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24634..25641)
DNA (1008bp) protein (336aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) Tax=GWA2_Rokubacteria_73_35_curated
ADP-heptose--LPS heptosyltransferase II (Modular protein) id=3956942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
lipopolysaccharide heptosyltransferase II
13_1_20cm_4_scaffold_134_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25626..26717)
DNA (1092bp) protein (364aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase id=3956947 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_134_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26714..27997)
DNA (1284bp) protein (428aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) id=3956951 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_134_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27997..28665)
DNA (669bp) protein (223aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K09778 hypothetical protein id=14627188 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_134_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28662..29789)
DNA (1128bp) protein (376aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) Tax=GWA2_Rokubacteria_73_35_curated
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase id=3956956 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 56 in total

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