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13_1_20cm_4_scaffold_178

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_178_trna_1
unknown

Not on your lists

comp(11..82)
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_178_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(122..874)
DNA (753bp) protein (251aa)
rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rRNA methyltransferase id=4675081 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rRNA methylase, putative, group 3
13_1_20cm_4_scaffold_178_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(871..2265)
DNA (1395bp) protein (465aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cysteine--tRNA ligase id=4675082 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cysS; cysteinyl-tRNA ligase
13_1_20cm_4_scaffold_178_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2262..2741)
DNA (480bp) protein (160aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] Tax=GWA2_Rokubacteria_73_35_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase id=4675083 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_20cm_4_scaffold_178_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2738..3418)
DNA (681bp) protein (227aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=4675084 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_20cm_4_scaffold_178_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3411..4430)
DNA (1020bp) protein (340aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14625946 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_178_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4452..5819)
DNA (1368bp) protein (456aa)
radA; DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA repair protein radA id=3836394 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
radA; DNA repair protein RadA
13_1_20cm_4_scaffold_178_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5800..6990)
DNA (1191bp) protein (397aa)
Mce family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Mce family protein id=4675086 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Mce family protein
13_1_20cm_4_scaffold_178_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7083..7826)
DNA (744bp) protein (248aa)
ABC transporter ATPase; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter; K02065 putative ABC transport system ATP-binding protein id=14625943 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
ABC transporter
13_1_20cm_4_scaffold_178_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7833..8315)
DNA (483bp) protein (161aa)
yrbE; toluene ABC transporter subunit membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Toluene transporter subunit: membrane component of ABC superfamily id=3836388 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yrbE; toluene ABC transporter subunit membrane protein
13_1_20cm_4_scaffold_178_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8461..8967)
DNA (507bp) protein (169aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4246273 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_178_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8974..9624)
DNA (651bp) protein (217aa)
phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19] Tax=RIFCSPLOWO2_02_FULL_
hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC:3.5.4.19 3.6.1.31)
Histidine biosynthesis bifunctional protein hisIE id=4831887 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_178_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9621..10391)
DNA (771bp) protein (257aa)
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Imidazole glycerol phosphate synthase subunit HisF id=4246275 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hisF; imidazole glycerol phosphate synthase subunit HisF
13_1_20cm_4_scaffold_178_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10480..11202)
DNA (723bp) protein (241aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase id=14625938 bin=bin7_NC10_sister species=Acinetobacter nectaris genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_178_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11199..11876)
DNA (678bp) protein (226aa)
imidazole glycerol phosphate synthase subunit hisH; K02501 glutamine amidotransferase [EC:2.4.2.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-] id=14625937 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
imidazole glycerol phosphate synthase subunit hisH
13_1_20cm_4_scaffold_178_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11881..12486)
DNA (606bp) protein (202aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19); K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] id=14625936 bin=bin7_NC10_sister species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
13_1_20cm_4_scaffold_178_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12483..13367)
DNA (885bp) protein (295aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase id=4246279 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_178_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13813..14499)
DNA (687bp) protein (229aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) id=14625934 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
13_1_20cm_4_scaffold_178_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14496..15749)
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase id=4980435 bin=GWA2_Methylomirabilis_73_35 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_178_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15749..16624)
DNA (876bp) protein (292aa)
protein-(glutamine-N5) methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Modification methylase HemK (EC:2.1.1.72)
Release factor glutamine methyltransferase id=4980434 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_178_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16624..17697)
DNA (1074bp) protein (358aa)
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide chain release factor 1 id=4980433 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prfA; peptide chain release factor 1
13_1_20cm_4_scaffold_178_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(17764..17976)
DNA (213bp) protein (71aa)
LSU ribosomal protein L31P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L31 id=14625930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
LSU ribosomal protein L31P
13_1_20cm_4_scaffold_178_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18060..19373)
DNA (1314bp) protein (438aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
rho; transcription termination factor Rho id=14625929 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
transcription termination factor Rho
13_1_20cm_4_scaffold_178_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19511..20593)
DNA (1083bp) protein (361aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PpiC-type peptidyl-prolyl cis-trans isomerase id=4980430 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_20cm_4_scaffold_178_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20590..22989)
DNA (2400bp) protein (800aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-)
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_178_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22935..23681)
DNA (747bp) protein (249aa)
mfd; transcription-repair-coupling factor (TRCF) (ATP-dependent helicase mfd) (EC:3.6.1.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcription-repair coupling factor id=4980429 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription-repair coupling factor
13_1_20cm_4_scaffold_178_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23721..24332)
DNA (612bp) protein (204aa)
rex; redox-sensing transcriptional repressor rex Tax=GWA2_Rokubacteria_73_35_curated
Redox-sensing transcriptional repressor rex id=4980428 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rex; redox-sensing transcriptional repressor rex
13_1_20cm_4_scaffold_178_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24439..24771)
DNA (333bp) protein (111aa)
ATP synthase subunit C, membrane-bound, F0 sector; DCCD-binding (EC:3.6.3.14) Tax=GWA2_Rokubacteria_70_23_curated
ATP synthase subunit C, membrane-bound, F0 sector DCCD-binding (Modular protein) id=4246292 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATP synthase f0 subcomplex c subunit
13_1_20cm_4_scaffold_178_28
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(24799..25554)
DNA (756bp) protein (252aa)
ATP synthase subunit A (EC:3.6.3.14) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
ATP synthase subunit A (EC:3.6.3.14) id=14625924 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
ATP synthase subunit A (EC:3.6.3.14)
13_1_20cm_4_scaffold_178_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(25557..25922)
DNA (366bp) protein (122aa)
id=14625923 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14625923 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Displaying items 1-30 of 64 in total

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