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13_1_20cm_4_scaffold_292

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_292_1
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..701
DNA (699bp) protein (233aa)
Putative sulfite oxidase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE84_METPP
Putative sulfite oxidase {ECO:0000313|EMBL:ABM93873.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain P
sulfite oxidase
13_1_20cm_4_scaffold_292_2
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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688..1293
DNA (606bp) protein (202aa)
Putative sulfite oxidase cytochrome subunit n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SE85_METPP
Cytochrome c {ECO:0000313|EMBL:EWS61178.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
sulfite oxidase cytochrome subunit
13_1_20cm_4_scaffold_292_3
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1332..1988
DNA (657bp) protein (219aa)
hypothetical protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
hypothetical protein id=24577506 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_20cm_4_scaffold_292_4
unknown

Not on your lists

comp(2067..2291)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_20cm_4_scaffold_292_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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2421..3368
DNA (948bp) protein (316aa)
Epoxide hydrolase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGE4_9BRAD
Epoxide hydrolase {ECO:0000313|EMBL:ETX06952.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
epoxide hydrolase
13_1_20cm_4_scaffold_292_6
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3431..4996)
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000366AD8E rbh
BNR/Asp-box repeat-containing protein {ECO:0000313|EMBL:ADG19831.1}; Flags: Precursor;; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholde
BNR/Asp-box repeat-containing protein
13_1_20cm_4_scaffold_292_7

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comp(5023..6252)
DNA (1230bp) protein (410aa)
Beta-lactamase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EGR0_RUNSL
Uncharacterized protein {ECO:0000313|EMBL:KKN59565.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
beta-lactamase
13_1_20cm_4_scaffold_292_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6266..7426)
DNA (1161bp) protein (387aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW99019.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Methionine synthase (B12-independent) id=3869302 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_20cm_4_scaffold_292_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7458..8705
DNA (1248bp) protein (416aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_20cm_4_scaffold_292_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8984..13324
DNA (4341bp) protein (1447aa)
RHS repeat-associated core domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhs family protein id=3847372 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YVTN family beta-propeller repeat protein
13_1_20cm_4_scaffold_292_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(13358..14011)
DNA (654bp) protein (218aa)
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF Tax=CSP1_6_Rokubacteria
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF id=14627183 bin=bin7_NC10_sister species=Afipia birgiae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_292_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(14013..14753)
DNA (741bp) protein (247aa)
livG; ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
livG; ABC transporter id=14627182 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_292_13
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(14756..15709)
DNA (954bp) protein (318aa)
inner-membrane translocator Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
inner-membrane translocator id=14627181 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
livM; high-affinity branched-chain amino acid transport system permease livM
13_1_20cm_4_scaffold_292_14

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comp(15709..16542)
DNA (834bp) protein (278aa)
Branched-chain amino acid transport system permease protein n=1 Tax=uncultured prokaryote RepID=H5SIP5_9ZZZZ
Branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:BAL56031.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
braD; high-affinity branched-chain amino acid transport system permease BraD
13_1_20cm_4_scaffold_292_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16628..17941)
DNA (1314bp) protein (438aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein id=14627179 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
extracellular ligand-binding receptor
13_1_20cm_4_scaffold_292_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18026..18337)
DNA (312bp) protein (104aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_20cm_4_scaffold_292_17
unknown

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comp(18653..18778)
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_20cm_4_scaffold_292_18
unknown

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18891..19820
DNA (930bp) protein (310aa)

This feature has no annotations

13_1_20cm_4_scaffold_292_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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20014..20292
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_4_scaffold_292_20
unknown

Not on your lists

20302..20445
DNA (144bp) protein (48aa)

This feature has no annotations

13_1_20cm_4_scaffold_292_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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20636..21484
DNA (849bp) protein (283aa)
hypothetical protein; K06990 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3670073 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_292_22
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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21510..23342
DNA (1833bp) protein (611aa)
hypothetical protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RBG_16_Armatimonadetes_67_12_curated
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003795B86
13_1_20cm_4_scaffold_292_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

23330..23704
DNA (375bp) protein (125aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4) id=14626830 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
13_1_20cm_4_scaffold_292_24
GWB1_OP11_48_13, Amesbacteria, Microgenomates, Bacteria

Not on your lists

23850..25208
DNA (1359bp) protein (453aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU98289.1}; TaxID=1618362 species="Bacteria; Microgenomates.;" source="Microgenomates (Amesbacteria) bacterium GW2011_GWB1_48_13.;"
Putative uncharacterized protein id=4170651 bin=GWC2_Planctomycete_KSU_39_26 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
13_1_20cm_4_scaffold_292_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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26181..26909
DNA (729bp) protein (243aa)
appA; oligopeptide-binding protein AppA Tax=GWA2_Rokubacteria_70_23_curated
Oligopeptide-binding protein AppA id=4333684 bin=GWF2_Methylomirabilis_70_14 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
oligopeptide ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_292_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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27049..28002
DNA (954bp) protein (318aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Dipeptide transporter membrane component of ABC superfamily id=4333685 bin=GWF2_Methylomirabilis_70_14 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter permease
13_1_20cm_4_scaffold_292_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

27999..28901
DNA (903bp) protein (301aa)
ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
Oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein id=4333686 bin=GWF2_Methylomirabilis_70_14 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
peptide ABC transporter permease
13_1_20cm_4_scaffold_292_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

28934..30118
DNA (1185bp) protein (395aa)
FAD dependent oxidoreductase Tax=GWA2_Rokubacteria_70_23_curated
Hypothetical conserved protein id=4333687 bin=GWF2_Methylomirabilis_70_14 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD dependent oxidoreductase
13_1_20cm_4_scaffold_292_29
Caenorhabditis briggsae, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

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comp(30176..30436)
DNA (261bp) protein (87aa)
Protein CBG03997 {ECO:0000313|EMBL:CAP24795.1}; TaxID=6238 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="
13_1_20cm_4_scaffold_292_30
unknown

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comp(30433..30501)
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 30 items

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