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13_1_20cm_4_scaffold_2966

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2966_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3..134)
DNA (132bp) protein (44aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulator, ArsR family id=1884754 bin=GWA2_Methylomirabilis_73_35 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2966_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(160..1248)
DNA (1089bp) protein (363aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=1884755 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
glycosyl transferase
13_1_20cm_4_scaffold_2966_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1308..1622)
DNA (315bp) protein (105aa)
RNP-1 like RNA-binding protein Tax=GWA2_Rokubacteria_73_35_curated
RNP-1 like RNA-binding protein id=1884756 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_1_20cm_4_scaffold_2966_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1744..2334
DNA (591bp) protein (197aa)
membrane-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SNARE associated Golgi protein-like protein id=2913053 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane-associated protein
13_1_20cm_4_scaffold_2966_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2360..3658
DNA (1299bp) protein (433aa)
integral membrane sensor signal transduction histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
Integral membrane sensor signal transduction histidine kinase id=3014939 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
integral membrane sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_2966_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3651..5030
DNA (1380bp) protein (460aa)
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
13_1_20cm_4_scaffold_2966_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5027..6208
DNA (1182bp) protein (394aa)
glycogen synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative mannosyl transferase
13_1_20cm_4_scaffold_2966_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6740..6895
DNA (156bp) protein (52aa)
phosphotransferase Tax=GWA2_Rokubacteria_73_35_curated
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2966_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6958..7431
DNA (474bp) protein (158aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_20cm_4_scaffold_2966_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7503..8144
DNA (642bp) protein (214aa)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LexA repressor
13_1_20cm_4_scaffold_2966_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8166..8345
DNA (180bp) protein (60aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=1884930 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2966_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8305..10221)
DNA (1917bp) protein (639aa)
metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
Displaying 12 items

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