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13_1_20cm_4_scaffold_3140

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3140_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


165..839
DNA (675bp) protein (225aa)
rplC; 50S ribosomal protein L3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L3 id=1776815 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rplC; 50S ribosomal protein L3
13_1_20cm_4_scaffold_3140_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


842..1471
DNA (630bp) protein (210aa)
rplD; 50S ribosomal protein L4 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L4 id=1776816 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplD; 50S ribosomal protein L4
13_1_20cm_4_scaffold_3140_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1533..1826
DNA (294bp) protein (98aa)
50S ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L23 id=1776817 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L25/L23
13_1_20cm_4_scaffold_3140_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1833..2657
DNA (825bp) protein (275aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L2 id=4799441 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L2
13_1_20cm_4_scaffold_3140_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2667..2960
DNA (294bp) protein (98aa)
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19
13_1_20cm_4_scaffold_3140_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


2965..3516
DNA (552bp) protein (184aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L22, bacterial type
13_1_20cm_4_scaffold_3140_7
Entamoeba histolytica, Entamoeba, Eukaryota

Not on your lists


3519..4463
DNA (945bp) protein (315aa)
Ribosomal protein S3, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS-B RepID=M3UKB4_ENTHI rbh
Ribosomal protein S3, putative {ECO:0000313|EMBL:EMH73696.1}; TaxID=885319 species="Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba.;" source="Entamoeba histolytica HM-1:IMSS-B.;"
30S ribosomal protein S3
13_1_20cm_4_scaffold_3140_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


4480..4686
DNA (207bp) protein (69aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L29
13_1_20cm_4_scaffold_3140_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


4673..4921
DNA (249bp) protein (83aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
13_1_20cm_4_scaffold_3140_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


4926..5294
DNA (369bp) protein (123aa)
rplN; ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; 50S ribosomal protein L14
13_1_20cm_4_scaffold_3140_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5557..5877
DNA (321bp) protein (107aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L24
13_1_20cm_4_scaffold_3140_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5882..6298
DNA (417bp) protein (139aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplE; 50S ribosomal protein L5
13_1_20cm_4_scaffold_3140_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


6238..6429
DNA (192bp) protein (64aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L5 id=4517046 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplE; 50S ribosomal protein L5
13_1_20cm_4_scaffold_3140_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


6437..6622
DNA (186bp) protein (62aa)
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14
13_1_20cm_4_scaffold_3140_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


6628..7023
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S8 id=4716768 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsH; 30S ribosomal protein S8
13_1_20cm_4_scaffold_3140_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


7034..7582
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplF; 50S ribosomal protein L6
13_1_20cm_4_scaffold_3140_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


7579..7944
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4716766 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
13_1_20cm_4_scaffold_3140_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


7968..8504
DNA (537bp) protein (179aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S5
13_1_20cm_4_scaffold_3140_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8485..8673
DNA (189bp) protein (63aa)
50S ribosomal protein L30 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
13_1_20cm_4_scaffold_3140_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8663..9130
DNA (468bp) protein (156aa)
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplO; 50S ribosomal protein L15
13_1_20cm_4_scaffold_3140_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


9127..10458
DNA (1332bp) protein (444aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
secY; preprotein translocase subunit SecY
13_1_20cm_4_scaffold_3140_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10460..11110
DNA (651bp) protein (217aa)
adenylate kinase family protein (EC:2.7.4.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
adenylate kinase
13_1_20cm_4_scaffold_3140_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11107..11856
DNA (750bp) protein (250aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I (EC:3.4.11.18)
methionine aminopeptidase, type I Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_4_scaffold_3140_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11853..12071
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=14625536 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
infA; translation initiation factor IF-1
13_1_20cm_4_scaffold_3140_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


12326..12682
DNA (357bp) protein (119aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=CSP1_6_Rokubacteria
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=14625537 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S13
13_1_20cm_4_scaffold_3140_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


12686..13093
DNA (408bp) protein (136aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_1_20cm_4_scaffold_3140_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


13103..14578
DNA (1476bp) protein (492aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S4
13_1_20cm_4_scaffold_3140_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


14575..15048
DNA (474bp) protein (158aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17
13_1_20cm_4_scaffold_3140_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15256..15930)
DNA (675bp) protein (225aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Dienelactone hydrolase family
13_1_20cm_4_scaffold_3140_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15933..17174)
DNA (1242bp) protein (414aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 36 in total

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