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13_1_20cm_2_scaffold_295

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_295_trna_2
unknown

Not on your lists

comp(20..92)
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_295_trna_1
unknown

Not on your lists

comp(161..245)
DNA (85bp)
transferRNA
13_1_20cm_2_scaffold_295_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(566..706)
DNA (141bp) protein (47aa)
DNA polymerase LigD, polymerase domain-containing protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_20cm_2_scaffold_295_2
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(717..1433)
DNA (717bp) protein (239aa)
ATP dependent DNA ligase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IP30_ANADE
ATP dependent DNA ligase {ECO:0000313|EMBL:ABC80559.1}; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;"
ATP dependent DNA ligase
13_1_20cm_2_scaffold_295_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(1588..2205)
DNA (618bp) protein (206aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PAS9_9SPHN
ATP dependent DNA ligase
13_1_20cm_2_scaffold_295_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2316..4454
DNA (2139bp) protein (713aa)
Indolepyruvate ferredoxin oxidoreductase subunit alpha n=2 Tax=Bordetella holmesii RepID=M5NKI6_9BORD
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_1_20cm_2_scaffold_295_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4451..5983
DNA (1533bp) protein (511aa)
Indolepyruvate ferredoxin oxidoreductase, beta subunit n=1 Tax=Azoarcus sp. KH32C RepID=H0PTN4_9RHOO
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit
13_1_20cm_2_scaffold_295_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5964..6167)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UJT6_CELFN
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_295_7
unknown

Not on your lists

comp(6175..6429)
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_20cm_2_scaffold_295_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6567..7265)
DNA (699bp) protein (233aa)
GAF sensor signal transduction histidine kinase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CC86_THET1 alias=16ft_combo_ws3_scaffold_144_69 id=5223828 tax=16ft_combo_ws3 species=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulatory protein ompR
13_1_20cm_2_scaffold_295_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7304..7882)
DNA (579bp) protein (193aa)
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
13_1_20cm_2_scaffold_295_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

7961..8314
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase subunit 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3] alias=RBG1_21,RBG1_C00001G00021 id=1249579 tax=RBG1 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_1_20cm_2_scaffold_295_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8305..8943
DNA (639bp) protein (213aa)
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoB; NADH dehydrogenase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] alias=RBG1_22,RBG1_C00001G00022 id=1249580 tax=RBG1 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes
nuoB; NADH dehydrogenase I subunit B
13_1_20cm_2_scaffold_295_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8951..9403
DNA (453bp) protein (151aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A439_THECD
NADH (or F420H2) dehydrogenase subunit C
13_1_20cm_2_scaffold_295_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9419..10054
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HP21_9BRAD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_20cm_2_scaffold_295_14
unknown

Not on your lists

10063..10152
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_20cm_2_scaffold_295_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10154..11314
DNA (1161bp) protein (387aa)
NADH dehydrogenase I, D subunit (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit D n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MNE4_9BACT
13_1_20cm_2_scaffold_295_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11311..12288
DNA (978bp) protein (326aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit H alias=RBG1_25,RBG1_C00001G00025 id=1249583 tax=RBG1 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes rbh
respiratory-chain NADH dehydrogenase subunit 1
13_1_20cm_2_scaffold_295_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12320..12850
DNA (531bp) protein (177aa)
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5)
NADH:ubiquinone oxidoreductase chain I-like protein (Fragment) alias=RBG1_26,RBG1_C00001G00026 id=1249584 tax=RBG1 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria
13_1_20cm_2_scaffold_295_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12847..13335
DNA (489bp) protein (163aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LE91_9BACT
proton-translocating NADH-quinone oxidoreductase subunit J
13_1_20cm_2_scaffold_295_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13335..13643
DNA (309bp) protein (103aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit K n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LDS6_9BACT
NADH-ubiquinone oxidoreductase subunit 4L
13_1_20cm_2_scaffold_295_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13648..15474
DNA (1827bp) protein (609aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Proton-translocating NADH-quinone oxidoreductase, chain L alias=RBG1_29,RBG1_C00001G00029 id=1249587 tax=RBG1 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_20cm_2_scaffold_295_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15471..17000
DNA (1530bp) protein (510aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase subunit M n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MHF9_9BACT rbh
13_1_20cm_2_scaffold_295_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16997..18406
DNA (1410bp) protein (470aa)
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit N n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L4T2_9BACT
13_1_20cm_2_scaffold_295_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18453..19175
DNA (723bp) protein (241aa)
dienelactone hydrolase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
dienelactone hydrolase (EC:3.1.1.45)
Dienelactone hydrolase n=1 Tax=Anabaena variabilis (strain ATCC 29413 / PCC 7937) RepID=Q3MBF9_ANAVT
13_1_20cm_2_scaffold_295_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19248..19853
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AGN5_GEOSK
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TetR family transcriptional regulator
Displaying 26 items

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