ggKbase home page

13_1_20cm_2_scaffold_2128

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2128_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..272)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037870E9
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_2128_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(526..1569)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WI2_RHOFD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
predicted permease
13_1_20cm_2_scaffold_2128_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1602..2009
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN24_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_2128_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2176..2364
DNA (189bp) protein (63aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_2_scaffold_2128_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2364..2960
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHX6_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_2128_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2974..3468
DNA (495bp) protein (165aa)
MOSC domain containing protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SFC5_9BACT
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
MOSC domain containing protein
13_1_20cm_2_scaffold_2128_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3562..4665)
DNA (1104bp) protein (368aa)
L-sorbosone dehydrogenase n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QKW9_9CYAN rbh
L-sorbosone dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
L-sorbosone dehydrogenase
13_1_20cm_2_scaffold_2128_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4650..5426)
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Q7_SPHTD
Enoyl-CoA hydratase/isomerase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase
13_1_20cm_2_scaffold_2128_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5764..6501
DNA (738bp) protein (246aa)
Adenosylmethionine decarboxylase {ECO:0000256|SAAS:SAAS00093036}; EC=4.1.1.50 {ECO:0000256|SAAS:SAAS00093036};; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sora
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZE6_SORCE
hypothetical protein
13_1_20cm_2_scaffold_2128_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6507..7583
DNA (1077bp) protein (359aa)
deoxyhypusine synthase; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
deoxyhypusine synthase (EC:2.5.1.46)
Deoxyhypusine synthase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6P951_9ARCH
13_1_20cm_2_scaffold_2128_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7611..8036
DNA (426bp) protein (142aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_2_scaffold_2128_12
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8037..8831)
DNA (795bp) protein (265aa)
anti-sigma factor n=1 Tax=Pseudomonas RepID=UPI0003825D47
Anti-sigma factor {ECO:0000313|EMBL:KDD65138.1}; TaxID=1419583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii PD
transmembrane transcriptional regulator
13_1_20cm_2_scaffold_2128_13
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8836..9381)
DNA (546bp) protein (182aa)
RNA polymerase sigma factor n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GDD3_PROFC
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1744 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium fre
rpoE; RNA polymerase sigma-70 factor, sigma-E factor
13_1_20cm_2_scaffold_2128_14
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9518..9850
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Smaragdicoccus niigatensis RepID=UPI00038090F6
Uncharacterized protein {ECO:0000313|EMBL:AJC22463.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.
hypothetical protein
13_1_20cm_2_scaffold_2128_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

9877..10794
DNA (918bp) protein (306aa)
Metallophosphoesterase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRM9_9BACT
Metallophosphoesterase {ECO:0000313|EMBL:EEF57500.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedos
metallophosphoesterase
13_1_20cm_2_scaffold_2128_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10828..11790)
DNA (963bp) protein (321aa)
Patatin n=1 Tax=Leptonema illini DSM 21528 RepID=H2CLD6_9LEPT
alpha/beta hydrolase superfamily esterase; K07001 NTE family protein Tax=GWA2_Rokubacteria_70_23_curated
patatin-like phospholipase
13_1_20cm_2_scaffold_2128_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(11840..13255)
DNA (1416bp) protein (472aa)
rnb; exoribonuclease II (EC:3.1.13.1) Tax=RBG_13_Acidobacteria_68_16_curated
rnb; exoribonuclease II (EC:3.1.13.1)
Putative exoribonuclease II n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM25_9BACT
13_1_20cm_2_scaffold_2128_18
unknown

Not on your lists

comp(13371..13523)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_2_scaffold_2128_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13520..14074)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00036D3E19
N-acetyltransferase GCN5 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
N-acetyltransferase GCN5
13_1_20cm_2_scaffold_2128_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14175..15557
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B41509
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_2128_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15580..16500
DNA (921bp) protein (307aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid aminotransferase n=1 Tax=Vibrio splendidus RepID=UPI0002FECE73
branched-chain amino acid aminotransferase
13_1_20cm_2_scaffold_2128_22
Emmonsia crescens, Emmonsia, Onygenales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

16538..17314
DNA (777bp) protein (259aa)
PREDICTED: uncharacterized protein LOC741359 n=1 Tax=Pan troglodytes RepID=UPI000292AD8D
Uncharacterized protein {ECO:0000313|EMBL:KKZ62169.1}; TaxID=1247875 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Emm
hypothetical protein
13_1_20cm_2_scaffold_2128_23
unknown

Not on your lists

17337..17966
DNA (630bp) protein (210aa)

This feature has no annotations

13_1_20cm_2_scaffold_2128_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17968..18879
DNA (912bp) protein (304aa)
2-keto-3-deoxy-D-arabinonate dehydratase (EC:4.2.1.-); K01726 [EC:4.2.1.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fumarylacetoacetate hydrolase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6EBF2
fumarylacetoacetate (FAA) hydrolase
13_1_20cm_2_scaffold_2128_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18883..19413
DNA (531bp) protein (177aa)
Metal dependent phosphohydrolase with GAF sensor n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NET8_DESAR
metal dependent phosphohydrolase with GAF sensor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
metal dependent phosphohydrolase with GAF sensor
13_1_20cm_2_scaffold_2128_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19449..19601)
DNA (153bp) protein (51aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXU8_HERA2
two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE Tax=GWC2_Rokubacteria_70_16_curated
two component transcriptional regulator
Displaying 26 items

View Taxonomy