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13_1_40cm_2_scaffold_28389

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_28389_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(3..1352)
DNA (1350bp) protein (450aa)
MEMO1 family protein STK_20620 n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=Y2062_SULTO
rps2P; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_28389_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(1365..1643)
DNA (279bp) protein (93aa)
DNA-directed RNA polymerase subunit N n=1 Tax=Acidianus hospitalis (strain W1) RepID=F4B761_ACIHW
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
RNA polymerase subunit N
13_1_40cm_2_scaffold_28389_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(1600..2010)
DNA (411bp) protein (137aa)
30S ribosomal protein S9 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7I1_METSW
rps9p; ribosomal protein S9P Rps9p; K02996 small subunit ribosomal protein S9 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S9
13_1_40cm_2_scaffold_28389_4
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(2007..2465)
DNA (459bp) protein (153aa)
50S ribosomal protein L13 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ17_PYRSN
50S ribosomal protein L13P
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA
13_1_40cm_2_scaffold_28389_5
RBG_16_Archaea_50_20_curated, Archaea

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comp(2462..3097)
DNA (636bp) protein (212aa)
rpoD; DNA-directed RNA polymerase subunit D; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
RNA polymerase insert n=1 Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BB81_9ARCH
RNA polymerase insert
13_1_40cm_2_scaffold_28389_6
unknown

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comp(3310..3729)
DNA (420bp) protein (140aa)

This feature has no annotations

13_1_40cm_2_scaffold_28389_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(3845..4540)
DNA (696bp) protein (232aa)
30S ribosomal protein S4 n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HJ21_PYRSN
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Archaea_50_20_curated
30S ribosomal protein S4
13_1_40cm_2_scaffold_28389_8
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(4555..5055)
DNA (501bp) protein (167aa)
30S ribosomal protein S13 n=1 Tax=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) RepID=RS13_STAMF
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RBG_16_Archaea_50_20_curated
rps13p; 30S ribosomal protein S13
13_1_40cm_2_scaffold_28389_9
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

5618..6082
DNA (465bp) protein (155aa)
S-adenosylmethionine decarboxylase proenzyme; K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] Tax=CG_Micra_05
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme (AdoMetDC)(SamDC) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YF21_DICT6
13_1_40cm_2_scaffold_28389_10
unknown

Not on your lists

6243..6509
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_2_scaffold_28389_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6680..7531
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00035E799E
peptidase M50
Putative peptidase M50 {ECO:0000313|EMBL:AFU58271.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera g
13_1_40cm_2_scaffold_28389_12
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7692..8012)
DNA (321bp) protein (107aa)
H/ACA RNA-protein complex component Cbf5p; K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_16_Bathyarchaeota_48_13_curated
Probable tRNA pseudouridine synthase B n=3 Tax=Thermofilum RepID=A1RXE0_THEPD
H/ACA RNA-protein complex component Cbf5p
13_1_40cm_2_scaffold_28389_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(7960..8418)
DNA (459bp) protein (153aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.12); K11131 H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Probable tRNA pseudouridine synthase B n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
13_1_40cm_2_scaffold_28389_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(8779..9075)
DNA (297bp) protein (99aa)
50S ribosomal protein L14e n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U1Z7_THEAM
50S ribosomal protein L14e; K02875 large subunit ribosomal protein L14e Tax=RBG_16_Archaea_50_20_curated
50S ribosomal protein L14
13_1_40cm_2_scaffold_28389_15
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(9119..9832)
DNA (714bp) protein (238aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] Tax=RBG_13_Bathyarchaeota_38_9_curated
cmk; cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) RepID=KCY_AERPE
13_1_40cm_2_scaffold_28389_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9945..10529)
DNA (585bp) protein (195aa)
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_28389_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(10531..11115)
DNA (585bp) protein (195aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=RBG_16_Archaea_50_20_curated
adkA; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3T9E3_9CREN
13_1_40cm_2_scaffold_28389_18
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11191..12432)
DNA (1242bp) protein (414aa)
Protein translocase subunit SecY n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U2G8_9ARCH
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
preprotein translocase subunit SecY
13_1_40cm_2_scaffold_28389_19

Not on your lists


comp(12568..12972)
DNA (405bp) protein (135aa)
50S ribosomal protein L15P n=1 Tax=Aeropyrum camini SY1 = JCM 12091 RepID=U3TEH7_9CREN
Marine sediment metagenome DNA, contig: S01H1_S18951 {ECO:0000313|EMBL:GAG27815.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rpl15p; 50S ribosomal protein L15
Displaying 19 items

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