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13_1_40cm_3_scaffold_5182

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_5182_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1..963)
DNA (963bp) protein (321aa)
Putative aldehyde dehydrogenase n=1 Tax=Variovorax paradoxus B4 RepID=T1XL28_VARPD
Aldehyde Dehydrogenase
Aldehyde Dehydrogenase {ECO:0000313|EMBL:AHG90561.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_5182_2
unknown

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1162..1356
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_3_scaffold_5182_3
unknown

Not on your lists

1311..2126
DNA (816bp) protein (272aa)

This feature has no annotations

13_1_40cm_3_scaffold_5182_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1945..3129)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P851_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_5182_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

3183..3947
DNA (765bp) protein (255aa)
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] Tax=RBG_16_Gemmatimonadetes_66_8_curated
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] id=24407690 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Calcineurin-like phosphoesterase superfamily domain protein
13_1_40cm_3_scaffold_5182_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3919..4719)
DNA (801bp) protein (267aa)
glutamate racemase; K01776 glutamate racemase [EC:5.1.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate racemase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E7X2_GEOLS
Glutamate racemase
13_1_40cm_3_scaffold_5182_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4716..5249)
DNA (534bp) protein (178aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_3_scaffold_5182_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5198..5983)
DNA (786bp) protein (262aa)
Diacylglycerol kinase, catalytic region n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TXD5_ALKMQ
diacylglycerol kinase catalytic subunit; K07029 Tax=GWC2_Gemmatimonadetes_71_10_curated
diacylglycerol kinase catalytic subunit
13_1_40cm_3_scaffold_5182_9
unknown

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comp(6172..6516)
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_40cm_3_scaffold_5182_10
unknown

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comp(6610..6957)
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_3_scaffold_5182_11
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7028..7372)
DNA (345bp) protein (115aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_3_scaffold_5182_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7545..7712)
DNA (168bp) protein (56aa)
Putative endoribonuclease L-PSP n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H9X4_ANADF id=5224227 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
endoribonuclease l-psp; K07567 TdcF protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
putative endoribonuclease L-PSP
13_1_40cm_3_scaffold_5182_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(7661..7882)
DNA (222bp) protein (74aa)
Putative endoribonuclease L-PSP (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FHQ7_9AQUI
endoribonuclease l-psp; K07567 TdcF protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
endoribonuclease L-PSP
13_1_40cm_3_scaffold_5182_14
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(7882..9564)
DNA (1683bp) protein (561aa)
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE57_GEMAT
13_1_40cm_3_scaffold_5182_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9561..9986)
DNA (426bp) protein (142aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036F7F88
LuxR family transcriptional regulator
13_1_40cm_3_scaffold_5182_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10290..11318)
DNA (1029bp) protein (343aa)
Protein translocase subunit SecF n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECF_GEMAT rbh
SecF protein
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_5182_17
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11318..12895)
DNA (1578bp) protein (526aa)
Protein translocase subunit SecD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=SECD_GEMAT
secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
SecD export membrane protein
13_1_40cm_3_scaffold_5182_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12895..13791)
DNA (897bp) protein (299aa)
ribF; riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=379066 species="Bacteria; Gemmatimonad
Riboflavin kinase/FMN adenylyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8P1_GEMAT
13_1_40cm_3_scaffold_5182_19
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13791..14582)
DNA (792bp) protein (264aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) s
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037CD54A
tRNA pseudouridine synthase B
13_1_40cm_3_scaffold_5182_20
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(14594..14950)
DNA (357bp) protein (119aa)
Ribosome-binding factor A n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DUM1_DESRL
ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
ribosome-binding factor A
13_1_40cm_3_scaffold_5182_21
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(14950..15216)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01W30_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ86135.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_3_scaffold_5182_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15235..17805)
DNA (2571bp) protein (857aa)
Translation initiation factor IF-2 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N8_GEMAT
initiation factor 2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_5182_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17808..17999)
DNA (192bp) protein (64aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_3_scaffold_5182_24
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18104..19432)
DNA (1329bp) protein (443aa)
Transcription elongation protein NusA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N6_GEMAT
nusA; transcription elongation protein NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
nusA; transcription elongation protein NusA
13_1_40cm_3_scaffold_5182_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(19917..20711)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N4_GEMAT
hypothetical protein; K05810 conserved hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_3_scaffold_5182_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20692..21933)
DNA (1242bp) protein (414aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2L3J3_9RHIZ
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=RBG_16_Gemmatimonadetes_66_8_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_40cm_3_scaffold_5182_27
unknown

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22035..23228
DNA (1194bp) protein (398aa)

This feature has no annotations

13_1_40cm_3_scaffold_5182_28
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

23586..23999
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N1_GEMAT
phospholipase C/P1 nuclease
Phospholipase C/P1 nuclease {ECO:0000313|EMBL:AHG90718.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_5182_29
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

24007..24453
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N1_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
phospholipase C/P1 nuclease
13_1_40cm_3_scaffold_5182_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(24450..25886)
DNA (1437bp) protein (479aa)
gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Gem
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8N0_GEMAT
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Displaying items 1-30 of 42 in total

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