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13_1_40cm_3_scaffold_1436

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1436_1
unknown

Not on your lists

comp(2..265)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_40cm_3_scaffold_1436_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(407..1009)
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VH1_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ86344.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_1_40cm_3_scaffold_1436_3
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1006..1641)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFC4_9BACT
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_1_40cm_3_scaffold_1436_4
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

1702..2466
DNA (765bp) protein (255aa)
RNA methyltransferase, TrmH family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3I9_ACIC5
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
TrmH family RNA methyltransferase
13_1_40cm_3_scaffold_1436_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2515..3348
DNA (834bp) protein (278aa)
3-demethylubiquinone-9 3-O-methyltransferase (EC:2.1.1.64); K00568 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] Tax=RBG_16_RIF_WS3X_71_46
Methyltransferase type 11 n=1 Tax=Frankia sp. CN3 RepID=G6HJZ2_9ACTO id=5223769 bin=16ft_combo_ws3_JS1 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_3_scaffold_1436_6

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3562..5388
DNA (1827bp) protein (609aa)
Marine sediment metagenome DNA, contig: S01H1_L03310 {ECO:0000313|EMBL:GAF68879.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
Glycosyl transferase family 39 id=1864268 bin=GWB2_Elusimicrobium_63_22 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
13_1_40cm_3_scaffold_1436_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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5541..6842
DNA (1302bp) protein (434aa)
Recombination protein MgsA n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IND5_KORVE
recombination factor protein RarA
Recombination protein MgsA {ECO:0000313|EMBL:ABF41615.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (st
13_1_40cm_3_scaffold_1436_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(6904..7332)
DNA (429bp) protein (143aa)
CoA-binding domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SF4_SOLUE
CoA-binding domain-containing protein; K06929 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
CoA-binding domain-containing protein
13_1_40cm_3_scaffold_1436_9
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(7329..8411)
DNA (1083bp) protein (361aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=GWC2_Nitrospirae_57_13_curated
Histidinol-phosphate aminotransferase id=3846051 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
histidinol-phosphate aminotransferase
13_1_40cm_3_scaffold_1436_10
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(8408..9127)
DNA (720bp) protein (240aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidoba
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYL7_9BACT
13_1_40cm_3_scaffold_1436_11
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(9180..9752)
DNA (573bp) protein (191aa)
Condensin subunit ScpB n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SF6_SOLUE
condensin subunit ScpB; K06024 segregation and condensation protein B Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
condensin subunit ScpB
13_1_40cm_3_scaffold_1436_12
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(9721..10470)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000371E370
condensin subunit ScpA; K05896 segregation and condensation protein A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
chromosome segregation and condensation protein ScpA
13_1_40cm_3_scaffold_1436_13
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(10477..11433)
DNA (957bp) protein (319aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Tryptophan--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJU0_KORVE
tryptophanyl-tRNA synthetase
13_1_40cm_3_scaffold_1436_14
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11464..12141)
DNA (678bp) protein (226aa)
M50B family peptidase (EC:3.4.24.-)
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI0003620933
Zn-dependent protease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
13_1_40cm_3_scaffold_1436_15
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

12204..13013
DNA (810bp) protein (270aa)
cytochrome c assembly protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Cytochrome c-type biogenesis protein CcsB id=4323972 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
cytochrome c-type biogenesis protein CcsB
13_1_40cm_3_scaffold_1436_16
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13013..14269
DNA (1257bp) protein (419aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.70); K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=GWC2_Pelobacteraceae_58_13_curated
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase id=4531935 bin=GWC2_Pelobacter_58_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good + rbh
13_1_40cm_3_scaffold_1436_17
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14448..15143
DNA (696bp) protein (232aa)
porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
Porphobilinogen deaminase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B858_9PROT
13_1_40cm_3_scaffold_1436_18
Stanieria cyanosphaera, Stanieria, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

15127..15519
DNA (393bp) protein (131aa)
uroporphyrin-III C-methyltransferase (EC:4.2.1.75 2.1.1.107)
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AFZ36005.1}; EC=2.1.1.107 {ECO:0000313|EMBL:AFZ36005.1};; EC=4.2.1.75 {ECO:0000313|EMBL:AFZ36005.1};; TaxID=111780 species="Bacteria; Cyanobacter
Uroporphyrinogen-III synthase n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8LB96_9CYAN
Displaying 18 items

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