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13_1_40cm_3_scaffold_8596

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_8596_1
unknown

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comp(1..426)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_2
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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comp(392..691)
DNA (300bp) protein (100aa)
Flagellar motor switch protein FliN/FliY n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PBE2_DEFDS
fliN; flagellar motor switch protein FliN/FliY
Flagellar motor switch protein FliN/FliY {ECO:0000313|EMBL:BAI79915.1}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter d
13_1_40cm_3_scaffold_8596_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(672..1580)
DNA (909bp) protein (303aa)
Flagellar motor switch protein FliM n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P027_9BACT
Flagellar motor switch protein FliM {ECO:0000313|EMBL:CDM65653.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar motor switch protein FliM
13_1_40cm_3_scaffold_8596_4
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1587..2330)
DNA (744bp) protein (248aa)
RNA polymerase sigma factor n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P026_9BACT
fliA; RNA polymerase sigma factor for flagellar operon Tax=RBG_13_Deltaproteobacteria_65_10_curated
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
13_1_40cm_3_scaffold_8596_5
Planomicrobium sp. ES2, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2327..3454)
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI000318FDA7
Flagellar biosynthesis protein FlhF {ECO:0000313|EMBL:CEG24321.1}; TaxID=1499687 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium.;" source="Planomicrobium sp. ES2.;"
flagellar biosynthetic protein flhf
13_1_40cm_3_scaffold_8596_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3426..5450)
DNA (2025bp) protein (675aa)
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:CDM65649.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA id=12556374 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar biosynthesis protein FlhA
13_1_40cm_3_scaffold_8596_7
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5496..6539)
DNA (1044bp) protein (348aa)
flagellar biosynthesis protein FlhB n=1 Tax=Geobacillus caldoxylosilyticus RepID=UPI00030D4E79
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB Tax=RBG_13_Deltaproteobacteria_52_11b_curated
flhB; flagellar biosynthesis protein FlhB
13_1_40cm_3_scaffold_8596_8
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6541..7290)
DNA (750bp) protein (250aa)
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR Tax=RBG_13_Deltaproteobacteria_58_19_curated
flagellar biosynthetic protein FliR; K02421 flagellar biosynthetic protein FliR id=12556376 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar biosynthetic protein FliR
13_1_40cm_3_scaffold_8596_9
Enterobacter sp. YD4, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7294..8226)
DNA (933bp) protein (311aa)
Flagellar biosynthetic protein FliP n=1 Tax=Enterobacter radicincitans DSM 16656 RepID=J1QH39_9ENTR
FliP protein {ECO:0000313|EMBL:KIS42382.1}; TaxID=1544796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. YD4.;"
flagellar biosynthetic protein FliP
13_1_40cm_3_scaffold_8596_10
unknown

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comp(8223..8408)
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_11
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8387..8701)
DNA (315bp) protein (105aa)
CheC, inhibitor of MCP methylation / FliN fusion protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FMH7_9BACL
CheC, inhibitor of MCP methylation / FliN fusion protein {ECO:0000313|EMBL:EPE63099.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguoba
fliN; flagellar motor switch protein FliN
13_1_40cm_3_scaffold_8596_12
unknown

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comp(8996..9187)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_13
unknown

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comp(9290..9748)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9745..11052)
DNA (1308bp) protein (436aa)
Type III secretion system ATPase, FliI/YscN {ECO:0000313|EMBL:CDM65639.1}; EC=3.6.3.15 {ECO:0000313|EMBL:CDM65639.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrin
FliI/YscN family ATPase (EC:3.6.3.14)
ATPase, FliI/YscN family n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D2X0_PAESJ rbh
13_1_40cm_3_scaffold_8596_15
RBG_16_Desulfobacca_58_9_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11055..11639)
DNA (585bp) protein (195aa)
Flagellar assembly protein FliH n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FJU6_DESAA
flagellar assembly protein FliH; K02411 flagellar assembly protein FliH Tax=RBG_16_Desulfobacca_58_9_curated
flagellar assembly protein FliH
13_1_40cm_3_scaffold_8596_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11623..12627)
DNA (1005bp) protein (335aa)
Flagellar motor switch protein FliG n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P2Z9_9BACT
Flagellar motor switch protein FliG {ECO:0000313|EMBL:CDM65641.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
flagellar motor switch protein flig
13_1_40cm_3_scaffold_8596_17
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12624..14252)
DNA (1629bp) protein (543aa)
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF id=12556390 bin=CNBR_ACIDO species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
flagellar M-ring protein FliF
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; Flags: Precursor;; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" sourc
13_1_40cm_3_scaffold_8596_18
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14274..14567)
DNA (294bp) protein (98aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TGA6_CALNY
flagellar hook-basal body complex subunit flie
hypothetical protein Tax=RBG_16_Deltaproteobacteria_42_7_curated
13_1_40cm_3_scaffold_8596_19
unknown

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comp(14590..14736)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_20
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(14733..16046)
DNA (1314bp) protein (438aa)
Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LRZ0_SYNAS
Fis family transcriptional regulator Tax=RBG_13_RIF03_48_7_curated
Fis family transcriptional regulator
13_1_40cm_3_scaffold_8596_21
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16024..16827)
DNA (804bp) protein (268aa)
sensory box histidine kinase Tax=RBG_13_Deltaproteobacteria_43_22_curated
Integral membrane sensor signal transduction histidine kinase id=3012333 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
sensory box histidine kinase
13_1_40cm_3_scaffold_8596_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17020..17592)
DNA (573bp) protein (191aa)
Response regulator receiver n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0Z2_9BACT
sigma-54 dependent response regulator Tax=GWA2_Rokubacteria_70_23_curated
response regulator receiver protein
13_1_40cm_3_scaffold_8596_23
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

17631..18773
DNA (1143bp) protein (381aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6CC3F
Fis family transcriptional regulator Tax=RBG_13_RIF03_48_7_curated
Fis family transcriptional regulator
13_1_40cm_3_scaffold_8596_24
unknown

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comp(18722..18961)
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_25
unknown

Not on your lists

comp(19406..19639)
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_26

Not on your lists

19761..20180
DNA (420bp) protein (140aa)
Marine sediment metagenome DNA, contig: S12H4_S15267 {ECO:0000313|EMBL:GAJ11850.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
id=1985480 bin=GWE2_Bacteroidetes_40_15 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
13_1_40cm_3_scaffold_8596_27
unknown

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20167..20694
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_28
unknown

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20755..20883
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_29
unknown

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20880..21581
DNA (702bp) protein (234aa)

This feature has no annotations

13_1_40cm_3_scaffold_8596_30
unknown

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21565..21858
DNA (294bp) protein (98aa)

This feature has no annotations

Displaying 30 items

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