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13_1_40cm_3_scaffold_354

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_354_1
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(3..275)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H7_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_1_40cm_3_scaffold_354_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(522..869)
DNA (348bp) protein (116aa)
4Fe-4S ferredoxin n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H6_9BACT
yfhL; 4Fe-4S ferredoxin Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yfhL; 4Fe-4S ferredoxin
13_1_40cm_3_scaffold_354_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1059..1553
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H5_9BACT
hypothetical protein; K09005 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_354_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

1625..1894
DNA (270bp) protein (90aa)
Putative 2Fe-2S ferredoxin n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H4_9BACT
putative 2Fe-2S ferredoxin
Putative 2Fe-2S ferredoxin {ECO:0000313|EMBL:CBK43806.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_354_5
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

1958..2704
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9R2_9BACT
fabG; putative 3-oxoacyl-[acyl-carrier protein] reductase Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
fabG; Short-chain alcohol dehydrogenase
13_1_40cm_3_scaffold_354_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2734..3093
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_354_7
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

3093..3932
DNA (840bp) protein (280aa)
dat; d-amino-acid transaminase (EC:2.6.1.21); K00824 D-alanine transaminase [EC:2.6.1.21] Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
dat; d-amino-acid transaminase (EC:2.6.1.21)
D-amino-acid transaminase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H2_9BACT
13_1_40cm_3_scaffold_354_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4070..4597
DNA (528bp) protein (176aa)
Ribosome maturation factor RimP n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H1_9BACT
yhbC; hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yhbC; hypothetical protein
13_1_40cm_3_scaffold_354_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4641..5831
DNA (1191bp) protein (397aa)
Transcription termination factor NusA n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8H0_9BACT rbh
nusA; transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nusA; transcription termination factor NusA
13_1_40cm_3_scaffold_354_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5874..8549
DNA (2676bp) protein (892aa)
Translation initiation factor IF-2 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G9_9BACT rbh
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
infB; translation initiation factor IF-2
13_1_40cm_3_scaffold_354_11
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

8657..8938
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43800.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_354_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9028..9414
DNA (387bp) protein (129aa)
Ribosome-binding factor A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G7_9BACT
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rbfA; ribosome-binding factor A
13_1_40cm_3_scaffold_354_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9437..10438
DNA (1002bp) protein (334aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.-); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G6_9BACT rbh
13_1_40cm_3_scaffold_354_14
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


10481..10750
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G5_9BACT
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rpsO; 30S ribosomal protein S15
13_1_40cm_3_scaffold_354_15
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

11029..13158
DNA (2130bp) protein (710aa)
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G3_9BACT rbh
13_1_40cm_3_scaffold_354_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

13167..14420
DNA (1254bp) protein (418aa)
putative M16 family Zn-dependent peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase, M16 family {ECO:0000313|EMBL:CBK43794.1}; EC=3.4.24.- {ECO:0000313|EMBL:CBK43794.1};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitro
Putative Zn-dependent peptidase, M16 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G2_9BACT rbh
13_1_40cm_3_scaffold_354_17
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

14675..15166
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8G0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_3_scaffold_354_18
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15244..15912
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F9_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43791.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_3_scaffold_354_19
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(15970..18660)
DNA (2691bp) protein (897aa)
DNA mismatch repair protein MutS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F8_9BACT rbh
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
mutS; DNA mismatch repair protein MutS
13_1_40cm_3_scaffold_354_20
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(18653..19009)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F7_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
hypothetical protein
13_1_40cm_3_scaffold_354_21
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19006..19599)
DNA (594bp) protein (198aa)
HIT family hydrolase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZL97_THELI
HIT family hydrolase Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
13_1_40cm_3_scaffold_354_22
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(19596..20024)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F6_9BACT
yjeE; hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yjeE; hypothetical protein
13_1_40cm_3_scaffold_354_23
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(20124..21359)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8F5_9BACT
yjeF; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
yjeF; hypothetical protein
Displaying 23 items

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