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13_1_40cm_3_scaffold_11927

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_11927_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..839)
DNA (837bp) protein (279aa)
Obg family GTPase CgtA; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
obgE; GTPase ObgE; K03979 GTP-binding protein id=12555753 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Obg family GTPase CgtA
13_1_40cm_3_scaffold_11927_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


comp(912..1169)
DNA (258bp) protein (86aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpmA; 50S ribosomal protein L27 id=12555754 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmA; 50S ribosomal protein L27
13_1_40cm_3_scaffold_11927_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


comp(1173..1487)
DNA (315bp) protein (105aa)
rplU; 50S ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rplU; 50S ribosomal protein L21 id=12555755 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplU; 50S ribosomal protein L21
13_1_40cm_3_scaffold_11927_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1633..2388)
DNA (756bp) protein (252aa)
id=12555756 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12555756 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_11927_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2354..2713)
DNA (360bp) protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
TPR Domain containing protein id=12555757 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_11927_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2988..4079
DNA (1092bp) protein (364aa)
Smf; Rossmann fold nucleotide-binding protein; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
smf; protein Smf; K04096 DNA processing protein id=12555758 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA protecting protein DprA
13_1_40cm_3_scaffold_11927_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4087..6591
DNA (2505bp) protein (835aa)
DNA topoisomerase; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
topA; DNA topoisomerase I (EC:5.99.1.2) id=12555759 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
DNA topoisomerase
13_1_40cm_3_scaffold_11927_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6588..8042
DNA (1455bp) protein (485aa)
tRNA (uracil-5-)-methyltransferase Gid; K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein (EC:2.1.1.74); K04094 methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] id=12555760 bin=CNBR_ACIDO species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
tRNA:m(5)U-54 methyltransferase (EC:2.1.1.74)
13_1_40cm_3_scaffold_11927_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

7999..9084
DNA (1086bp) protein (362aa)
tyrosine recombinase XerC; K03733 integrase/recombinase XerC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
xerC; tyrosine recombinase XerC id=12555761 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tyrosine recombinase XerC
13_1_40cm_3_scaffold_11927_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(8994..10331)
DNA (1338bp) protein (446aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=12555762 bin=CNBR_ACIDO species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Displaying 10 items

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