ggKbase home page

13_1_40cm_3_scaffold_2960

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2960_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(119..1279)
DNA (1161bp) protein (387aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
oxidoreductase domain-containing protein id=12557856 bin=CNBR_ACIDO species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dehydrogenase
13_1_40cm_3_scaffold_2960_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(1427..2356)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035C2246
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABJ82811.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
13_1_40cm_3_scaffold_2960_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(2460..4115)
DNA (1656bp) protein (552aa)
Pyrrolo-quinoline quinone n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VM2_SOLUE rbh
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ABJ86293.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" sourc
13_1_40cm_3_scaffold_2960_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(4277..5194)
DNA (918bp) protein (306aa)
Cytochrome c, class I n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VM1_SOLUE rbh
class I cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABJ86294.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="S
13_1_40cm_3_scaffold_2960_5
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5287..6318
DNA (1032bp) protein (344aa)
transcriptional regulator, LacI family; K05499 LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG id=12555394 bin=CNBR_ACIDO species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACG78569.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source
13_1_40cm_3_scaffold_2960_6
unknown

Not on your lists

comp(6359..6565)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_3_scaffold_2960_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(6693..8168)
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036A4233
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ABJ81546.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" sourc
13_1_40cm_3_scaffold_2960_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(8428..9240)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000367185A
class I cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABJ81547.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="S
13_1_40cm_3_scaffold_2960_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

9430..11127
DNA (1698bp) protein (566aa)
gluconate 2-dehydrogenase (EC:1.1.99.3) Tax=RBG_16_Acidobacteria_70_10_curated
gluconate 2-dehydrogenase (EC:1.1.99.3) id=12554830 bin=CNBR_ACIDO species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GMC oxidoreductase
13_1_40cm_3_scaffold_2960_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

11192..11800
DNA (609bp) protein (203aa)
Tat pathway signal sequence domain-containing protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Tat pathway signal sequence domain-containing protein id=12554829 bin=CNBR_ACIDO species=Flexithrix dorotheae genus=Flexithrix taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tat pathway signal sequence domain-containing protein
13_1_40cm_3_scaffold_2960_11
GWA2_OP11_nov_42_16, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

12254..14392
DNA (2139bp) protein (713aa)
spermidine synthase n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00035D76E7
Spermidine synthase-like protein {ECO:0000313|EMBL:KKS41338.1}; TaxID=1618441 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWA2_42_16.;"
spermine synthase
13_1_40cm_3_scaffold_2960_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14556..15383
DNA (828bp) protein (276aa)
Hydroxypyruvate isomerase {ECO:0000313|EMBL:CDM66326.1}; EC=5.3.1.22 {ECO:0000313|EMBL:CDM66326.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="
Xylose isomerase domain protein TIM barrel n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PH9_SOLUE
Xylose isomerase domain-containing protein TIM barrel
13_1_40cm_3_scaffold_2960_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15494..16204
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFA8_RHOMR
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF1080
13_1_40cm_3_scaffold_2960_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16307..16903
DNA (597bp) protein (199aa)
Putative oxidoreductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0V9_9GAMM
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AHX13299.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Displaying 14 items

View Taxonomy