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13_1_40cm_3_scaffold_3357

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3357_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..368)
DNA (366bp) protein (122aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_3_scaffold_3357_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(459..1082)
DNA (624bp) protein (208aa)
hypothetical protein; K09778 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein; K09778 hypothetical protein id=12555169 bin=CNBR_ACIDO species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_3357_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1164..2786)
DNA (1623bp) protein (541aa)
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
electron-transferring-flavoprotein dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] id=12556274 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
electron-transferring-flavoprotein dehydrogenase
13_1_40cm_3_scaffold_3357_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3376..3687)
DNA (312bp) protein (104aa)
Electron transfer flavoprotein, alpha subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IK99_KORVE
electron transfer flavoprotein, alpha subunit; K03522 electron transfer flavoprotein alpha subunit Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
electron transfer flavoprotein subunit alpha
13_1_40cm_3_scaffold_3357_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3801..4565)
DNA (765bp) protein (255aa)
electron transfer flavoprotein beta-subunit; K03521 electron transfer flavoprotein beta subunit Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
electron transfer flavoprotein beta-subunit; K03521 electron transfer flavoprotein beta subunit id=12556268 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
electron transfer flavoprotein subunit beta
13_1_40cm_3_scaffold_3357_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(4859..6106)
DNA (1248bp) protein (416aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] id=12555168 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
3-oxoacyl-ACP synthase (EC:2.3.1.41)
13_1_40cm_3_scaffold_3357_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6199..6441)
DNA (243bp) protein (81aa)
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
acpP; acyl carrier protein; K02078 acyl carrier protein id=12555167 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
acpP; acyl carrier protein
13_1_40cm_3_scaffold_3357_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(6451..7191)
DNA (741bp) protein (247aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] id=12555166 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fabG; 3-oxoacyl-[acyl-carrier-protein] reductase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
3-oxoacyl-[acyl-carrier protein] reductase
13_1_40cm_3_scaffold_3357_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7184..8161)
DNA (978bp) protein (326aa)
ACP S-malonyltransferase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHS7_KORVE
ACP S-malonyltransferase
13_1_40cm_3_scaffold_3357_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8142..8888)
DNA (747bp) protein (249aa)
glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Phosphate acyltransferase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=PLSX_KORVE
glycerol-3-phosphate acyltransferase PlsX
13_1_40cm_3_scaffold_3357_11
unknown

Not on your lists

9053..9205
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_3_scaffold_3357_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


comp(9271..9453)
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 id=12555164 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpmF; 50S ribosomal protein L32
13_1_40cm_3_scaffold_3357_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9466..9993)
DNA (528bp) protein (176aa)
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein; K07040 uncharacterized protein id=12555163 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_3_scaffold_3357_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10263..11303)
DNA (1041bp) protein (347aa)
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1] id=12555162 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
deoxyguanosinetriphosphate triphosphohydrolase
13_1_40cm_3_scaffold_3357_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11372..12481)
DNA (1110bp) protein (370aa)
phosphopentomutase; K01839 phosphopentomutase [EC:5.4.2.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
phosphopentomutase (EC:5.4.2.7); K01839 phosphopentomutase [EC:5.4.2.7] id=12555161 bin=CNBR_ACIDO species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphopentomutase (EC:5.4.2.7)
13_1_40cm_3_scaffold_3357_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(12533..12790)
DNA (258bp) protein (86aa)
RNA-binding protein Hfq n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029X0_SOLUE
host factor Hfq; K03666 host factor-I protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
RNA-binding protein Hfq
13_1_40cm_3_scaffold_3357_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12790..13737)
DNA (948bp) protein (316aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=12555160 bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
13_1_40cm_3_scaffold_3357_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13893..14867)
DNA (975bp) protein (325aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12555159 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_3_scaffold_3357_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14960..15700)
DNA (741bp) protein (247aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] id=12555158 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ubiquinone/menaquinone biosynthesis methyltransferase
13_1_40cm_3_scaffold_3357_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15846..16850)
DNA (1005bp) protein (335aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative 4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] id=12555156 bin=CNBR_ACIDO species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_3_scaffold_3357_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16926..18092)
DNA (1167bp) protein (389aa)
S-adenosylhomocysteine deaminase (EC:3.5.4.28) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S-adenosylhomocysteine deaminase (EC:3.5.4.28) id=12555155 bin=CNBR_ACIDO species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
S-adenosylhomocysteine deaminase (EC:3.5.4.28)
13_1_40cm_3_scaffold_3357_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18137..19348)
DNA (1212bp) protein (404aa)
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
radical SAM protein id=12555154 bin=CNBR_ACIDO species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
ThiH; thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
13_1_40cm_3_scaffold_3357_23
unknown

Not on your lists

comp(19323..19406)
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 23 items

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