ggKbase home page

13_2_20cm_scaffold_1601

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1601_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1..1326)
DNA (1326bp) protein (442aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
Selenocysteine-specific translation elongation factor n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADE4_THEID
selB; Selenocysteine-specific elongation factor (SelB translation factor) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_2_20cm_scaffold_1601_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1290..2087)
DNA (798bp) protein (266aa)
DNA repair protein RecO n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8H2_GEMAT
DNA repair protein recO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;"
13_2_20cm_scaffold_1601_3
unknown

Not on your lists

comp(2090..2980)
DNA (891bp) protein (297aa)

This feature has no annotations

13_2_20cm_scaffold_1601_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(3063..4949)
DNA (1887bp) protein (629aa)
Putative TonB-dependent outer membrane receptor for cobalamin and Fe transport n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHA1_9BACT
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AHG90671.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_1601_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4946..5743)
DNA (798bp) protein (266aa)
btuC; putative vitamin B12 transport protein BtuD; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative vitamin B12 transport protein BtuD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M7_GEMAT
btuC; putative vitamin B12 transport protein BtuD
13_2_20cm_scaffold_1601_6
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5728..6633)
DNA (906bp) protein (302aa)
Putative vitamin B12 transport protein BtuC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5M8_GEMAT
transmembrane ABC transporter protein,permease; K02015 iron complex transport system permease protein Tax=GWC2_Gemmatimonadetes_71_10_curated
iron ABC transporter
13_2_20cm_scaffold_1601_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(6630..7541)
DNA (912bp) protein (304aa)
ABC transporter substrate binding protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G9_GEMAT
ABC transporter substrate-binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ABC transporter substrate-binding protein
13_2_20cm_scaffold_1601_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7854..8747)
DNA (894bp) protein (298aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_2_20cm_scaffold_1601_9
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8809..9360)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G7_GEMAT
hypothetical protein; K08999 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein of unknown function DUF151
13_2_20cm_scaffold_1601_10
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(9342..10688)
DNA (1347bp) protein (449aa)
Adenosylhomocysteinase n=1 Tax=delta proteobacterium NaphS2 RepID=D8FF04_9DELT
adenosylhomocysteinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
adenosylhomocysteinase
13_2_20cm_scaffold_1601_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10685..11911)
DNA (1227bp) protein (409aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
S-adenosylmethionine synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G6_GEMAT rbh
13_2_20cm_scaffold_1601_12
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11933..13735)
DNA (1803bp) protein (601aa)
ptsI; phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G5_GEMAT
13_2_20cm_scaffold_1601_13
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(13732..13935)
DNA (204bp) protein (68aa)
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein id=7200581 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
phosphotransferase system, phosphocarrier protein HPr
13_2_20cm_scaffold_1601_14
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(14002..14532)
DNA (531bp) protein (177aa)
Phosphotransferase system enzyme IID component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G3_GEMAT
phosphotransferase system enzyme IID component; K02796 PTS system, mannose-specific IID component Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PTS system mannose/fructose/sorbose family IID component
13_2_20cm_scaffold_1601_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(14712..15401)
DNA (690bp) protein (230aa)
Putative phosphotransferase system enzyme IIC component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G2_GEMAT
phosphotransferase system PTS sorbose-specific IIC subunit
Phosphotransferase system PTS sorbose-specific IIC subunit {ECO:0000313|EMBL:AHG90661.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_2_20cm_scaffold_1601_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15398..15871)
DNA (474bp) protein (158aa)
Phosphotransferase system enzyme IIB component n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8G1_GEMAT
phosphotransferase system enzyme IIB component Tax=GWC2_Gemmatimonadetes_71_10_curated
phosphotransferase system enzyme IIB component
13_2_20cm_scaffold_1601_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(15868..16248)
DNA (381bp) protein (127aa)
phosphotransferase system enzyme IIA component; K02744 PTS system, N-acetylgalactosamine-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PTS system fructose subfamily IIA component
13_2_20cm_scaffold_1601_18
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16241..17476)
DNA (1236bp) protein (412aa)
hprK; HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
HPr kinase/phosphorylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F9_GEMAT
hprK; HPr kinase/phosphorylase
13_2_20cm_scaffold_1601_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(17479..18372)
DNA (894bp) protein (298aa)
putative glycosyltransferase (EC:2.4.-.-) Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative glycosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F8_GEMAT
glycosyl transferase group 1
13_2_20cm_scaffold_1601_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(18947..19387)
DNA (441bp) protein (147aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=GWC2_Gemmatimonadetes_71_10_curated
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B4437F
13_2_20cm_scaffold_1601_21
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19435..20640)
DNA (1206bp) protein (402aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II (EC:3.5.4.25 4.1.99.12); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
Riboflavin biosynthesis protein RibBA n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F5_GEMAT
3,4-dihydroxy-2-butanone 4-phosphate synthase
13_2_20cm_scaffold_1601_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(20622..21245)
DNA (624bp) protein (208aa)
ribE; riboflavin synthase alpha chain (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ribE; riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase alpha chain n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F4_GEMAT
13_2_20cm_scaffold_1601_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21227..22300)
DNA (1074bp) protein (358aa)
ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26); K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-
Riboflavin biosynthesis protein RibD n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F3_GEMAT
riboflavin biosynthesis protein RibD
13_2_20cm_scaffold_1601_24
unknown

Not on your lists

comp(22323..23246)
DNA (924bp) protein (308aa)

This feature has no annotations

13_2_20cm_scaffold_1601_25
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23256..24284)
DNA (1029bp) protein (343aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F1_GEMAT
phosphoribosylformylglycinamidine cyclo-ligase
13_2_20cm_scaffold_1601_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24281..25210)
DNA (930bp) protein (310aa)
PfkB family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8F0_GEMAT rbh
PfkB family protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
PfkB domain protein
13_2_20cm_scaffold_1601_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(25207..26853)
DNA (1647bp) protein (549aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RBG_16_Gemmatimonadetes_66_8_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8E9_GEMAT rbh
13_2_20cm_scaffold_1601_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(26850..27149)
DNA (300bp) protein (100aa)
type I antifreeze protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
regulatory protein, FmdB family
FmdB family regulatory protein id=24601146 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_2_20cm_scaffold_1601_29
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(27208..27798)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003612996
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_2_20cm_scaffold_1601_30
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(28223..28663)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Arthrobacter sp. SJCon RepID=L8TWC8_9MICC
surface antigen gene Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
YVTN family beta-propeller domain-containing protein
Displaying items 1-30 of 31 in total

View Taxonomy