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13_2_20cm_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_224_1
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1106)
DNA (1104bp) protein (368aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
peptidase S41
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_2_20cm_scaffold_224_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1103..2494)
DNA (1392bp) protein (464aa)
fixN; cytochrome-c oxidase fixN chain (EC:1.9.3.1)
Cytochrome-c oxidase FixN chain {ECO:0000313|EMBL:CCE99720.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CCE99720.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiacea
Cytochrome-c oxidase fixN chain n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF88_RHIFH
13_2_20cm_scaffold_224_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2531..3373)
DNA (843bp) protein (281aa)
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] id=14625131 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=CSP1_6_Rokubacteria
endopeptidase htpX (EC:3.4.24.-)
13_2_20cm_scaffold_224_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3549..4058
DNA (510bp) protein (170aa)
Putative uncharacterized protein id=4343489 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07040 uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_224_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


4077..4259
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_224_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4299..5321
DNA (1023bp) protein (341aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphate acyltransferase id=2638116 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative glycerol-3-phosphate acyltransferase PlsX
13_2_20cm_scaffold_224_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5318..6298
DNA (981bp) protein (327aa)
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] id=14625127 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III
13_2_20cm_scaffold_224_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6324..7178
DNA (855bp) protein (285aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=14625126 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ACP S-malonyltransferase
13_2_20cm_scaffold_224_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7198..7947
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-oxoacyl-(Acyl-carrier-protein) reductase FabG id=2547036 bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
fabG-2; 3-oxoacyl-ACP reductase
13_2_20cm_scaffold_224_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7995..8231
DNA (237bp) protein (79aa)
acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
acpP; acyl carrier protein; K02078 acyl carrier protein id=14625124 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
acpP; acyl carrier protein
13_2_20cm_scaffold_224_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8234..9502
DNA (1269bp) protein (423aa)
fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=2638134 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_224_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9511..9954
DNA (444bp) protein (148aa)
rnc; ribonuclease 3; K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease 3 id=3897273 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease III
13_2_20cm_scaffold_224_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9964..11109
DNA (1146bp) protein (382aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625121 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_224_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11135..12370)
DNA (1236bp) protein (412aa)
Major facilitator superfamily MFS_1 Tax=GWA2_Rokubacteria_70_23_curated
Major facilitator superfamily MFS_1 id=14627704 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
Major facilitator superfamily MFS_1
13_2_20cm_scaffold_224_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12444..13817
DNA (1374bp) protein (458aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] id=14625120 bin=bin7_NC10_sister species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=CSP1_6_Rokubacteria
glutamate--ammonia ligase
13_2_20cm_scaffold_224_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

13814..14575
DNA (762bp) protein (254aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC:1.1.1.-) id=14625119 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
short-chain dehydrogenase/reductase SDR Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
short-chain dehydrogenase/reductase SDR
13_2_20cm_scaffold_224_17
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14592..16268
DNA (1677bp) protein (559aa)
ABC transporter permease n=1 Tax=Paenibacillus elgii RepID=UPI000248DC31
2-aminoethylphosphonate ABC transport system, permease protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_224_18
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16289..17284
DNA (996bp) protein (332aa)
Extracellular solute-binding protein family 1 n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W3D0_DESIS
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
family 1 extracellular solute-binding protein
13_2_20cm_scaffold_224_19
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

17292..18350
DNA (1059bp) protein (353aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae;
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NIN4_ROSCS rbh
spermidine/putrescine ABC transporter ATPase
13_2_20cm_scaffold_224_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18347..19081
DNA (735bp) protein (245aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Short-chain dehydrogenase/reductase SDR id=4307391 bin=GWC2_Methylomirabilis_70_16 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fabG; 3-oxoacyl-ACP reductase
13_2_20cm_scaffold_224_21
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19125..19736)
DNA (612bp) protein (204aa)
ThiJ/PfpI domain-containing protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
ThiJ/PfpI domain protein id=4669069 bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ThiJ/PfpI domain-containing protein
13_2_20cm_scaffold_224_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19729..20271)
DNA (543bp) protein (181aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NUDIX hydrolase id=2694190 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase
13_2_20cm_scaffold_224_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20331..20561
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=2694187 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_224_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20567..20794
DNA (228bp) protein (76aa)
hypothetical protein id=2694184 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_224_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20794..21642
DNA (849bp) protein (283aa)
hypothetical protein AATC3_01647 id=2694182 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
s-adenosylmethionine transferase Tax=GWA2_Rokubacteria_73_35_curated
s-adenosylmethionine transferase
13_2_20cm_scaffold_224_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21682..21924
DNA (243bp) protein (81aa)
hypothetical protein id=2694174 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_224_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

21949..22236
DNA (288bp) protein (96aa)
Putative uncharacterized protein id=4307470 bin=GWC2_Methylomirabilis_70_16 species=Legionella pneumophila genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
alkylhydroperoxidase like protein
13_2_20cm_scaffold_224_28
unknown

Not on your lists

comp(22363..22530)
DNA (168bp) protein (56aa)

This feature has no annotations

13_2_20cm_scaffold_224_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22920..24038
DNA (1119bp) protein (373aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
major facilitator superfamily transporter id=14625101 bin=bin7_NC10_sister species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily MFS-1 transporter
13_2_20cm_scaffold_224_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24038..25141
DNA (1104bp) protein (368aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625100 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1
Displaying items 1-30 of 49 in total

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