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13_2_20cm_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_253_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

428..2860
DNA (2433bp) protein (811aa)
coxL-2; carbon monoxide dehydrogenase large subunit CoxL/CutL 2 (EC:1.2.99.2)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein id=3729544 bin=GWF2_Methylomirabilis_70_14 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_253_2
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2939..4870
DNA (1932bp) protein (644aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucan
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Desulfovibrio sp. U5L RepID=I2PYG6_9DELT rbh
1,4-alpha-glucan branching protein
13_2_20cm_scaffold_253_3
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

4910..6994
DNA (2085bp) protein (695aa)
malQ4; 4-alpha-glucanotransferase (EC:2.4.1.25) Tax=GWC2_Nitrospirae_57_9_curated
Glycogen debranching enzyme n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4C6_GEODF rbh
glycogen debranching protein
13_2_20cm_scaffold_253_4
unknown

Not on your lists

comp(6991..7296)
DNA (306bp) protein (102aa)

This feature has no annotations

13_2_20cm_scaffold_253_5
unknown

Not on your lists

comp(7309..7413)
DNA (105bp) protein (35aa)

This feature has no annotations

13_2_20cm_scaffold_253_6
Photobacterium profundum, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7425..7886)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YYH3_PHOPR
Uncharacterized protein {ECO:0000313|EMBL:EAS41349.1}; TaxID=314280 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium profundu
13_2_20cm_scaffold_253_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8056..9411)
DNA (1356bp) protein (452aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TPR repeat protein id=4029902 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_253_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9408..10637)
DNA (1230bp) protein (410aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative O-linked N-acetylglucosamine transferase, SPINDLY family id=1325892 bin=GWE1_T_denit_62_9 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
13_2_20cm_scaffold_253_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10797..11177)
DNA (381bp) protein (127aa)
Putative uncharacterized protein id=3677765 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07068 Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_scaffold_253_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11170..12324)
DNA (1155bp) protein (385aa)
propanoyl-CoA C-acyltransferase (EC:2.3.1.176); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWC2_Rokubacteria_70_16_curated
propanoyl-CoA C-acyltransferase (EC:2.3.1.176)
Propanoyl-CoA C-acyltransferase id=4813972 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_253_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12379..13353
DNA (975bp) protein (325aa)
Putative uncharacterized protein id=2338962 bin=GWA2_Methylomirabilis_73_35 species=Subdoligranulum sp. 4_3_54A2FAA genus=Subdoligranulum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Predicted dehydrogenases and related proteins Tax=GWA2_Rokubacteria_73_35_curated
Oxidoreductase
13_2_20cm_scaffold_253_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13935..15011
DNA (1077bp) protein (359aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein binding protein id=14626651 bin=bin7_NC10_sister species=Dasypus novemcinctus genus=Dasypus taxon_order=Cingulata taxon_class=Mammalia phylum=Chordata tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_253_13
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15008..16654
DNA (1647bp) protein (549aa)
AMP-binding enzyme family protein {ECO:0000313|EMBL:EGK12727.1}; EC=6.2.1.- {ECO:0000313|EMBL:EGK12727.1};; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Des
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-binding enzyme family protein n=1 Tax=Desmospora sp. 8437 RepID=F5SDZ0_9BACL
13_2_20cm_scaffold_253_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16659..17030)
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3501913 bin=GWC2_Methylomirabilis_70_16 species=Ignisphaera aggregans genus=Ignisphaera taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_253_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17109..18713
DNA (1605bp) protein (535aa)
ilvG; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=GWC2_Rokubacteria_70_16_curated
Acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit id=3164071 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_253_16
unknown

Not on your lists

18760..19035
DNA (276bp) protein (92aa)

This feature has no annotations

13_2_20cm_scaffold_253_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

19430..19642
DNA (213bp) protein (71aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_2_20cm_scaffold_253_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19650..20048)
DNA (399bp) protein (133aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UbiD decarboxylase family protein id=4827625 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_2_20cm_scaffold_253_19
unknown

Not on your lists

20383..20985
DNA (603bp) protein (201aa)

This feature has no annotations

13_2_20cm_scaffold_253_20
unknown

Not on your lists

21022..21147
DNA (126bp) protein (42aa)

This feature has no annotations

13_2_20cm_scaffold_253_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21171..22409
DNA (1239bp) protein (413aa)
Extracellular ligand-binding receptor id=2654115 bin=GWC2_Methylomirabilis_70_24 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
Extracellular ligand-binding receptor Tax=GWA2_Rokubacteria_70_23_curated
Extracellular ligand-binding receptor
13_2_20cm_scaffold_253_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

22599..23474
DNA (876bp) protein (292aa)
tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase id=4547685 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Rahnella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
2-hydroxy-3-oxopropionate reductase Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_253_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23489..24655
DNA (1167bp) protein (389aa)
aminopeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metallopeptidase family M24 protein id=4827678 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aminopeptidase
13_2_20cm_scaffold_253_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24829..25860
DNA (1032bp) protein (344aa)
gutB; sorbitol dehydrogenase (EC:1.1.1.14)
zinc-containing alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Zn-dependent alcohol dehydrogenase (Fragment) id=4827702 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_253_25
unknown

Not on your lists

26257..26559
DNA (303bp) protein (101aa)

This feature has no annotations

13_2_20cm_scaffold_253_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

26581..27861
DNA (1281bp) protein (427aa)
phosphoenolpyruvate synthase; K01007 pyruvate, water dikinase [EC:2.7.9.2] Tax=GWA2_Rokubacteria_70_23_curated
Phosphoenolpyruvate synthase id=4827704 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
phosphoenolpyruvate synthase
13_2_20cm_scaffold_253_27
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(27881..29110)
DNA (1230bp) protein (410aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_2_20cm_scaffold_253_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(29141..29260)
DNA (120bp) protein (40aa)
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_scaffold_253_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(29298..29798)
DNA (501bp) protein (167aa)
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter related id=4827655 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livF; Branched-chain amino acid transport ATP-binding protein LivF
13_2_20cm_scaffold_253_30
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(29795..30544)
DNA (750bp) protein (250aa)
ABC transporter permease; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter permease protein id=3033655 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
Displaying items 1-30 of 52 in total

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