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13_1_40cm_scaffold_15520

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_15520_1
unknown

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comp(1..87)
DNA (87bp) protein (29aa)

This feature has no annotations

13_1_40cm_scaffold_15520_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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150..959
DNA (810bp) protein (270aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
13_1_40cm_scaffold_15520_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1042..1413
DNA (372bp) protein (124aa)
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase Tax=GWA2_Rokubacteria_73_35_curated
phosphatase, C-terminal domain of histone macro H2A1 like protein
13_1_40cm_scaffold_15520_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1420..3018
DNA (1599bp) protein (533aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
type IV pilus assembly protein PilB
Type IV-A pilus assembly ATPase PilB id=4139314 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
13_1_40cm_scaffold_15520_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3050..4171
DNA (1122bp) protein (374aa)
PilT
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twitching motility protein id=3773050 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twitching motility protein
PilT, pilus retraction ATPase Cristina Butterfield (7/21/16)
13_1_40cm_scaffold_15520_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4191..5363
DNA (1173bp) protein (391aa)
pilC; type 4 fimbrial assembly protein pilC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type 4 fimbrial assembly protein pilC id=4686861 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
type II secretion system protein
13_1_40cm_scaffold_15520_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5363..6985
DNA (1623bp) protein (541aa)
multi-sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Multi-sensor signal transduction histidine kinase id=4686862 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Multi-sensor signal transduction histidine kinase
13_1_40cm_scaffold_15520_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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6978..8360
DNA (1383bp) protein (461aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=14625676 bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pilR; transcriptional regulatory protein pilR
13_1_40cm_scaffold_15520_9
unknown

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8605..8670
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 9 items

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