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13_1_40cm_scaffold_5988

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5988_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..1944
DNA (1944bp) protein (648aa)
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit
13_1_40cm_scaffold_5988_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1941..3578
DNA (1638bp) protein (546aa)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoacid:ferredoxin oxidoreductase, gamma subunit id=1906446 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative indolepyruvate oxidoreductase subunit beta
13_1_40cm_scaffold_5988_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3463..3867)
DNA (405bp) protein (135aa)
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
two component sigma-54 specific Fis family transcriptional regulator id=14626363 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_5988_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

4217..4570
DNA (354bp) protein (118aa)
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_5988_5
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

4561..5124
DNA (564bp) protein (188aa)
nuoB; NADH dehydrogenase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
NADH-quinone oxidoreductase subunit B n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LE89_9BACT
NADH-quinone oxidoreductase
13_1_40cm_scaffold_5988_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5127..5579
DNA (453bp) protein (151aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14626931 bin=bin7_NC10_sister species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C
13_1_40cm_scaffold_5988_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5602..6237
DNA (636bp) protein (212aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14626930 bin=bin7_NC10_sister species=Bradyrhizobium elkanii genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_5988_8
unknown

Not on your lists

comp(6677..6856)
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_40cm_scaffold_5988_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7374..8297
DNA (924bp) protein (308aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit H id=4149417 bin=GWC2_Methylomirabilis_70_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
respiratory-chain NADH dehydrogenase subunit 1
13_1_40cm_scaffold_5988_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8287..8862
DNA (576bp) protein (192aa)
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NADH-quinone oxidoreductase subunit i (EC:1.6.99.5)
NADH:ubiquinone oxidoreductase chain I-like protein (Fragment) id=3051776 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_5988_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8859..9353
DNA (495bp) protein (165aa)
proton-translocating NADH-quinone oxidoreductase subunit J; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD(P)H-quinone oxidoreductase chain 6 (NAD(P)H dehydrogenase I, chain 6) (NDH-1, chain 6) id=3051773 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
13_1_40cm_scaffold_5988_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9350..9649
DNA (300bp) protein (100aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit K id=3738931 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nuoK; NADH-quinone oxidoreductase chain K
13_1_40cm_scaffold_5988_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9654..11483
DNA (1830bp) protein (610aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=14626924 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_40cm_scaffold_5988_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11673..13199
DNA (1527bp) protein (509aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
NADH dehydrogenase subunit M id=3606252 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_5988_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13205..14632
DNA (1428bp) protein (476aa)
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] id=14626922 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain N
13_1_40cm_scaffold_5988_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14871..15380
DNA (510bp) protein (170aa)
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TetR family transcriptional regulator id=14626921 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TetR family transcriptional regulator
13_1_40cm_scaffold_5988_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15386..15685
DNA (300bp) protein (100aa)
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ECF subfamily RNA polymerase sigma factor id=4751264 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24 subunit
Displaying 17 items

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