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13_1_40cm_scaffold_407

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_407_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(600..1424)
DNA (825bp) protein (275aa)
rhomboid family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rhomboid family protein id=14431019 bin=bin3_NC10 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin3_NC10 organism_group=NC10
protease
13_1_40cm_scaffold_407_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1919..4453
DNA (2535bp) protein (845aa)
potassium transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
K(+)-insensitive pyrophosphate-energized proton pump id=3585892 bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
potassium transporter
13_1_40cm_scaffold_407_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

4461..5093
DNA (633bp) protein (211aa)
dedA; protein dedA (Protein DSG-1) id=14627389 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
dedA; protein dedA (Protein DSG-1) Tax=CSP1_6_Rokubacteria
dedA; protein dedA (Protein DSG-1)
13_1_40cm_scaffold_407_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5132..5950
DNA (819bp) protein (273aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] id=14627386 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Lipid A biosynthesis acyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
lipid A biosynthesis acyltransferase
13_1_40cm_scaffold_407_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5950..6591
DNA (642bp) protein (214aa)
hypothetical protein id=5027499 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_407_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6616..7017)
DNA (402bp) protein (134aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=14627385 bin=bin7_NC10_sister species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_407_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7268..8506
DNA (1239bp) protein (413aa)
soluble lytic murein transglycosylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase id=5027497 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Membrane-bound lytic murein transglycosylase D
13_1_40cm_scaffold_407_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8503..8748
DNA (246bp) protein (82aa)
sulfur carrier protein ThiS id=14627382 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
sulfur carrier protein ThiS Tax=CSP1_6_Rokubacteria
sulfur carrier protein ThiS
13_1_40cm_scaffold_407_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8745..9593)
DNA (849bp) protein (283aa)
ribonuclease BN; K07058 membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease BN id=5027495 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease BN
13_1_40cm_scaffold_407_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10011..10163
DNA (153bp) protein (51aa)
hypothetical protein id=14430956 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
13_1_40cm_scaffold_407_trna_1
unknown

Not on your lists

10525..10618
DNA (94bp)
transferRNA
13_1_40cm_scaffold_407_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10634..11164
DNA (531bp) protein (177aa)
hypothetical protein id=14627381 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_407_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11142..11630
DNA (489bp) protein (163aa)
id=2650396 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=2650396 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11635..11919
DNA (285bp) protein (95aa)
hypothetical protein id=3372626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_407_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11909..13309
DNA (1401bp) protein (467aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-seryl-tRNA selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase id=3372624 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13306..15360
DNA (2055bp) protein (685aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor id=14627377 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
13_1_40cm_scaffold_407_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15399..15590
DNA (192bp) protein (64aa)
Sec-independent protein translocase TatE; K03116 sec-independent protein translocase protein TatA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sec-independent protein translocase protein TatA id=4006883 bin=GWC2_Methylomirabilis_70_16 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twin-arginine translocation protein, TatA/E family subunit
13_1_40cm_scaffold_407_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15632..16528
DNA (897bp) protein (299aa)
ROK family glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=GWA2_Rokubacteria_70_23_curated
glucokinase (EC:2.7.1.2)
Glucokinase id=4049684 bin=GWC2_Methylomirabilis_70_24 species=Kineosphaera limosa genus=Kineosphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_407_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16554..17225
DNA (672bp) protein (224aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3372618 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_407_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17177..17590
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=3372618 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17556..19040
DNA (1485bp) protein (495aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3372616 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_407_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19051..19668
DNA (618bp) protein (206aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3372452 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19687..22512
DNA (2826bp) protein (942aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=4006793 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_407_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22509..22985
DNA (477bp) protein (159aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipoprotein signal peptidase id=4006792 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_407_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23107..24030
DNA (924bp) protein (308aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pseudouridine synthase id=4608907 bin=GWC2_Methylomirabilis_70_24 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RluA family pseudouridine synthase
13_1_40cm_scaffold_407_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24096..25484
DNA (1389bp) protein (463aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_1_40cm_scaffold_407_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25489..27390
DNA (1902bp) protein (634aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4783126 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_27
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27834..28304
DNA (471bp) protein (157aa)
5'-deoxynucleotidase Shew_1913 n=1 Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QE81_SHELP
Uncharacterized protein {ECO:0000313|EMBL:ETX04361.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
13_1_40cm_scaffold_407_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28332..31571
DNA (3240bp) protein (1080aa)
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-) Tax=GWA2_Rokubacteria_73_35_curated
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA id=4783127 bin=GWA2_Methylomirabilis_73_35 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_407_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

31568..31855
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) id=14627416 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
Displaying items 1-30 of 53 in total

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