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13_1_40cm_scaffold_1444

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1444_1
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(1..204)
DNA (204bp) protein (68aa)
Anti-sigma-factor antagonist id=4927121 bin=GWA2_Ignavibacteria_55_11 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
anti-sigma-factor antagonist Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
rsbR; sigma activity regulator
13_1_40cm_scaffold_1444_2
unknown

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comp(219..353)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_1444_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(574..1122)
DNA (549bp) protein (183aa)
Gas vesicle structural protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GVPA_KORVE
Gas vesicle structural protein
Gas vesicle structural protein {ECO:0000256|HAMAP-Rule:MF_00576, ECO:0000256|RuleBase:RU000632}; Short=GVP {ECO:0000256|HAMAP-Rule:MF_00576};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" sourc
13_1_40cm_scaffold_1444_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1568..1975)
DNA (408bp) protein (136aa)
Gas vesicle structural protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GVPA_KORVE
Gas vesicle structural protein (GVP) {ECO:0000313|EMBL:AKF10197.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" so
gas vesicle protein GvpA
13_1_40cm_scaffold_1444_trna_1
unknown

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comp(2288..2361)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_1444_5
unknown

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2531..3760
DNA (1230bp) protein (410aa)

This feature has no annotations

13_1_40cm_scaffold_1444_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3779..4090)
DNA (312bp) protein (104aa)
MerR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, MerR family id=4853974 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MerR family transcriptional regulator
13_1_40cm_scaffold_1444_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4132..4416)
DNA (285bp) protein (95aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integration host factor subunit alpha
13_1_40cm_scaffold_1444_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4442..5467)
DNA (1026bp) protein (342aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sporulation related domain protein
13_1_40cm_scaffold_1444_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(5464..6351)
DNA (888bp) protein (296aa)
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_1444_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(6351..7706)
DNA (1356bp) protein (452aa)
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein; K03977 GTP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
small GTP-binding protein domain-containing protein
13_1_40cm_scaffold_1444_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7711..9042)
DNA (1332bp) protein (444aa)
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PDZ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron-sulfur cluster-binding oxidoreductase, cyano_FeS_chp family
13_1_40cm_scaffold_1444_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9017..9589)
DNA (573bp) protein (191aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_1444_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9609..10892)
DNA (1284bp) protein (428aa)
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein HflX
13_1_40cm_scaffold_1444_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10889..11827)
DNA (939bp) protein (313aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=GWA2_Rokubacteria_73_35_curated
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
miaA-1; tRNA delta(2)-isopentenylpyrophosphate transferase
13_1_40cm_scaffold_1444_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11842..13536)
DNA (1695bp) protein (565aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutL id=4555220 bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mutL; DNA mismatch repair protein
13_1_40cm_scaffold_1444_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13703..16159)
DNA (2457bp) protein (819aa)
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutS id=4430853 bin=GWC2_Methylomirabilis_70_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
DNA mismatch repair protein MutS
13_1_40cm_scaffold_1444_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16179..16661)
DNA (483bp) protein (161aa)
histidine triad (HIT) protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein
13_1_40cm_scaffold_1444_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16678..16953)
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histone family protein DNA-binding protein
13_1_40cm_scaffold_1444_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17034..17930)
DNA (897bp) protein (299aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Peptidase S49, putative signal peptide peptidase SppA id=4941224 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1444_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(17939..19651)
DNA (1713bp) protein (571aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_40cm_scaffold_1444_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(19638..20333)
DNA (696bp) protein (232aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=CSP1_6_Rokubacteria
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_scaffold_1444_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20315..20989)
DNA (675bp) protein (225aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=GWA2_Rokubacteria_70_23_curated
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=4430859 bin=GWC2_Methylomirabilis_70_24 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_1444_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21110..22447)
DNA (1338bp) protein (446aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase id=4941220 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_1444_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22444..23295)
DNA (852bp) protein (284aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] id=14627230 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
prephenate dehydrogenase (EC:1.3.1.12)
13_1_40cm_scaffold_1444_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(23292..24404)
DNA (1113bp) protein (371aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] id=14627229 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate aminotransferase
13_1_40cm_scaffold_1444_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24414..25475)
DNA (1062bp) protein (354aa)
pheA; chorismate mutase/prephenate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chorismate mutase/prephenate dehydratase id=3333763 bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prephenate dehydratase
13_1_40cm_scaffold_1444_27
unknown

Not on your lists

25689..25916
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_40cm_scaffold_1444_28
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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25923..26240
DNA (318bp) protein (106aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_scaffold_1444_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26224..26826)
DNA (603bp) protein (201aa)
scpB; Segregation and condensation protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Segregation and condensation protein B id=3333773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
scpB; Segregation and condensation protein B
Displaying items 1-30 of 39 in total

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