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13_1_40cm_scaffold_1545

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1545_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1..1338
DNA (1338bp) protein (446aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_40cm_scaffold_1545_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1348..2046
DNA (699bp) protein (233aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=GWA2_Rokubacteria_73_35_curated
Chaperone protein dnaJ 1
13_1_40cm_scaffold_1545_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2168..2563
DNA (396bp) protein (132aa)
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=GWA2_Rokubacteria_73_35_curated
transcriptional regulator
13_1_40cm_scaffold_1545_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2601..4988
DNA (2388bp) protein (796aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_40cm_scaffold_1545_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5055..5738
DNA (684bp) protein (228aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic
13_1_40cm_scaffold_1545_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5744..6172)
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625661 bin=bin7_NC10_sister species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_1545_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6169..6708)
DNA (540bp) protein (180aa)
Isochorismatase hydrolase id=3544307 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
isochorismatase hydrolase Tax=GWA2_Rokubacteria_73_35_curated
isochorismatase hydrolase
13_1_40cm_scaffold_1545_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7103..8326
DNA (1224bp) protein (408aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
13_1_40cm_scaffold_1545_9
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8323..9762
DNA (1440bp) protein (480aa)
Putative Chase2 sensor protein n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T6Y2_ALCXX
CHASE2 domain protein {ECO:0000313|EMBL:CEA06024.1}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 12M
nucleotide cyclase
13_1_40cm_scaffold_1545_10
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9759..10139
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:EKE75348.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum
13_1_40cm_scaffold_1545_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10136..11629
DNA (1494bp) protein (498aa)
Putative Zn dependent protease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ89_9BURK
Putative Zn dependent protease {ECO:0000313|EMBL:EIK89279.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenoph
hypothetical protein
13_1_40cm_scaffold_1545_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11690..13207)
DNA (1518bp) protein (506aa)
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulator Tax=CSP1_6_Rokubacteria
transcriptional regulator
13_1_40cm_scaffold_1545_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13270..13668
DNA (399bp) protein (133aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4953988 bin=GWC2_Methylomirabilis_70_16 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1545_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13685..15100
DNA (1416bp) protein (472aa)
two component, sigma54 specific, transcriptional regulator, Fis family; K07714 two-component system, NtrC family, response regulator AtoC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system response regulator, sigma54-specific id=4571215 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component system response regulator, sigma54-specific
13_1_40cm_scaffold_1545_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15391..17052
DNA (1662bp) protein (554aa)
ABC-type dipeptide transport system, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC-type dipeptide transport system, periplasmic component
13_1_40cm_scaffold_1545_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17492..18913
DNA (1422bp) protein (474aa)
two component system sensor histidine kinase (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1545_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18897..20039
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003187B6A
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
putative PAS/PAC sensor protein
13_1_40cm_scaffold_1545_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20054..21007)
DNA (954bp) protein (318aa)
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625214 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_1_40cm_scaffold_1545_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21004..21864)
DNA (861bp) protein (287aa)
amino acid/amide ABC transporter membrane protein 1, HAAT family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Inner-membrane translocator id=3772784 bin=GWC2_Methylomirabilis_70_16 species=Halorubrum saccharovorum genus=Halorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_scaffold_1545_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21866..22573)
DNA (708bp) protein (236aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=3772781 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter-like protein
13_1_40cm_scaffold_1545_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(22573..23319)
DNA (747bp) protein (249aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter related id=3772779 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter ATP-binding protein
13_1_40cm_scaffold_1545_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(23321..24625)
DNA (1305bp) protein (435aa)
amino acid/amide ABC transporter substrate-binding protein, HAAT family id=14625210 bin=bin7_NC10_sister species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=CSP1_6_Rokubacteria
extracellular ligand-binding receptor
13_1_40cm_scaffold_1545_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25162..25818)
DNA (657bp) protein (219aa)
MerR family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B38033
Uncharacterized protein {ECO:0000313|EMBL:CDX28981.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
13_1_40cm_scaffold_1545_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(25913..26833)
DNA (921bp) protein (307aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] id=14625209 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=CSP1_6_Rokubacteria
dihydrodipicolinate synthetase
13_1_40cm_scaffold_1545_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(26827..27096)
DNA (270bp) protein (90aa)
isochorismatase hydrolase id=14625208 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
isochorismatase hydrolase Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_1545_26
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

comp(27120..27488)
DNA (369bp) protein (123aa)
putative spermidine synthase with an N-terminal membrane domain Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
Putative spermidine synthase with an N-terminal membrane domain id=2590861 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Displaying 26 items

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