ggKbase home page

13_1_40cm_scaffold_3550

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3550_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..1264)
DNA (1263bp) protein (421aa)
Peptide ABC transporter substrate-binding protein id=4797023 bin=GWC2_Methylomirabilis_70_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide ABC transporter substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
peptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_3550_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1282..2223)
DNA (942bp) protein (314aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262); K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase id=3666470 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3550_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2220..3326)
DNA (1107bp) protein (369aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type III effector Hrp-dependent outers id=3666471 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Hrp-dependent type III effector protein
13_1_40cm_scaffold_3550_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3358..3999
DNA (642bp) protein (214aa)
resA; thiol-disulfide oxidoreductase ResA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Thiol-disulfide oxidoreductase id=3666472 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
resA; thiol-disulfide oxidoreductase ResA
13_1_40cm_scaffold_3550_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4002..4739
DNA (738bp) protein (246aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c biogenesis protein CcdA id=3666473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccdA; cytochrome c biogenesis protein CcdA
13_1_40cm_scaffold_3550_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4750..5670
DNA (921bp) protein (307aa)
homoserine kinase; K00872 homoserine kinase [EC:2.7.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homoserine kinase id=3666474 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
homoserine kinase
13_1_40cm_scaffold_3550_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5667..6818
DNA (1152bp) protein (384aa)
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] Tax=GWA2_Rokubacteria_73_35_curated
dcd; 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13)
2'-deoxycytidine 5'-triphosphate deaminase id=3666475 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_3550_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7295..8200
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family id=3666476 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LysR family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
LysR family transcriptional regulator
13_1_40cm_scaffold_3550_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8283..9281
DNA (999bp) protein (333aa)
selenide, water dikinase; K01008 selenide, water dikinase [EC:2.7.9.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Selenide, water dikinase id=3666477 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenide, water dikinase
13_1_40cm_scaffold_3550_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9396..10493
DNA (1098bp) protein (366aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1L6_AZOSB
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
13_1_40cm_scaffold_3550_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10566..11276)
DNA (711bp) protein (237aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V471_9BRAD
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:EFI52751.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sourc
cytochrome c biogenesis protein transmembrane region
13_1_40cm_scaffold_3550_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11281..11664)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00037ACC91
Thiol-disulfide isomerase {ECO:0000313|EMBL:EYR77593.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioredoxin (H-type,TRX-H)
13_1_40cm_scaffold_3550_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11685..11972)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3735761 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_3550_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12058..13182
DNA (1125bp) protein (375aa)
Glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=14626576 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Glycosyl transferase, group 1
13_1_40cm_scaffold_3550_15
unknown

Not on your lists

comp(13118..13594)
DNA (477bp) protein (159aa)

This feature has no annotations

13_1_40cm_scaffold_3550_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13654..14667
DNA (1014bp) protein (338aa)
MoxR-like ATPases (EC:3.6.3.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MoxR-like ATPases (EC:3.6.3.-) id=14626575 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
MoxR-like ATPases (EC:3.6.3.-)
13_1_40cm_scaffold_3550_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14664..16109
DNA (1446bp) protein (482aa)
id=3287913 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626574 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_3550_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

16113..17003
DNA (891bp) protein (297aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3887908 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_3550_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17131..21333
DNA (4203bp) protein (1401aa)
chloride channel Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Conserved putative chloride channel id=3887967 bin=GWC2_Methylomirabilis_70_24 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
chloride channel
13_1_40cm_scaffold_3550_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

21326..22669
DNA (1344bp) protein (448aa)
peptidase S1 and S6 chymotrypsin/Hap; K12600 superkiller protein 3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625358 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_3550_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22678..23664
DNA (987bp) protein (329aa)
galactose-1-phosphate uridylyltransferase; K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Galactose-1-phosphate uridylyltransferase id=3714124 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
13_1_40cm_scaffold_3550_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23772..24203
DNA (432bp) protein (144aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative transcription factor IscR
Displaying 22 items

View Taxonomy