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13_1_40cm_scaffold_567

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_567_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..450)
DNA (450bp) protein (150aa)
enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
enoyl-CoA hydratase (EC:4.2.1.17) id=14626853 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
enoyl-CoA hydratase (EC:4.2.1.17)
13_1_40cm_scaffold_567_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(466..2544)
DNA (2079bp) protein (693aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_567_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2483..9019)
DNA (6537bp) protein (2179aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
multi-sensor hybrid histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_567_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8962..10395)
DNA (1434bp) protein (478aa)
pyk; pyruvate kinase Pyk (EC:2.7.1.40) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Pyruvate kinase id=3055333 bin=GWA2_Methylomirabilis_73_35 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate kinase
13_1_40cm_scaffold_567_5
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10587..13499)
DNA (2913bp) protein (971aa)
UvrABC system protein A n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9Q4_GEOUR
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit A
13_1_40cm_scaffold_567_6
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(13581..15275)
DNA (1695bp) protein (565aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZX83_OPITP
G8 domain-containing protein Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
SMP-30/gluconolaconase/LRE domain-containing protein
13_1_40cm_scaffold_567_7
unknown

Not on your lists

15290..15487
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_567_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15987..17609)
DNA (1623bp) protein (541aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4491880 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_scaffold_567_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17715..18116
DNA (402bp) protein (134aa)
GlcNAc-PI de-N-acetylase family id=4766137 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GlcNAc-PI de-N-acetylase family Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_567_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18056..18316
DNA (261bp) protein (87aa)
GlcNAc-PI de-N-acetylase family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GlcNAc-PI de-N-acetylase family id=4766137 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GlcNAc-PI de-N-acetylase family
13_1_40cm_scaffold_567_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18374..19969
DNA (1596bp) protein (532aa)
AMP-dependent synthetase and ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=4491884 bin=GWC2_Chloroflexi_73_18 species=Methylobacterium nodulans genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
AMP-dependent synthetase and ligase
13_1_40cm_scaffold_567_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19980..20627
DNA (648bp) protein (216aa)
Luciferase-like, subgroup id=4766108 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_1_40cm_scaffold_567_13
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20714..21151)
DNA (438bp) protein (146aa)
membrane protein n=1 Tax=Streptomyces chartreusis RepID=UPI000262E7F6
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:EPJ40965.1}; TaxID=1283301 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
13_1_40cm_scaffold_567_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21209..21859)
DNA (651bp) protein (217aa)
fsaB; fructose-6-phosphate aldolase 2 (EC:4.1.2.-)
transaldolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable transaldolase id=4607301 bin=GWC2_Methylomirabilis_70_16 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_567_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21876..22265)
DNA (390bp) protein (130aa)
hypothetical protein; K09143 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein; K09143 hypothetical protein id=14626940 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_567_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22313..23155)
DNA (843bp) protein (281aa)
PfkB domain protein id=4607299 bin=GWC2_Methylomirabilis_70_16 species=Chloroflexus aurantiacus genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribokinase-like domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_567_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23158..24057)
DNA (900bp) protein (300aa)
Putative uncharacterized protein id=4177889 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
phospholipase/Carboxylesterase family protein
13_1_40cm_scaffold_567_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24062..25210)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase-like; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase id=1829190 bin=GWA2_Methylomirabilis_73_35 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase-like
13_1_40cm_scaffold_567_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(25261..26523)
DNA (1263bp) protein (421aa)
coenzyme F390 synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Coenzyme F390 synthetase id=4607297 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
coenzyme F390 synthetase
13_1_40cm_scaffold_567_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(26541..26987)
DNA (447bp) protein (149aa)
glbN; hemoglobin-like protein HBN; K06886 hemoglobin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Hemoglobin-like protein HbN id=1829184 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glbN; hemoglobin-like protein HbN
13_1_40cm_scaffold_567_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26999..27793)
DNA (795bp) protein (265aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=1829182 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=GWA2_Rokubacteria_73_35_curated
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
13_1_40cm_scaffold_567_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(27832..29067)
DNA (1236bp) protein (412aa)
putative branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=1829180 bin=GWA2_Methylomirabilis_73_35 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
13_1_40cm_scaffold_567_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(29094..30161)
DNA (1068bp) protein (356aa)
ABC-type branched-chain amino acid transport system, permease component id=1829178 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_scaffold_567_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(30370..33114)
DNA (2745bp) protein (915aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
amp-dependent synthetase and ligase (EC:6.2.1.26)
AMP-dependent synthetase and ligase id=1829174 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_567_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(33388..34170)
DNA (783bp) protein (261aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter related protein id=1829172 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_567_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(34316..35116)
DNA (801bp) protein (267aa)
livF1; branched-chain amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Branched-chain amino acid ABC transporter ATPase id=1829170 bin=GWA2_Methylomirabilis_73_35 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livF1; branched-chain amino acid ABC transporter ATPase
13_1_40cm_scaffold_567_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(35116..36438)
DNA (1323bp) protein (441aa)
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1829168 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter periplasmic protein
13_1_40cm_scaffold_567_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(36464..37576)
DNA (1113bp) protein (371aa)
Branched-chain amino acid transport system permease protein LivM n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GWM9_9PROT
livM; high-affinity branched-chain amino acid transport system permease livM; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
inner-membrane translocator
Displaying 28 items

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