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13_1_40cm_scaffold_634

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_634_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..2146)
DNA (2145bp) protein (715aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3986857 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_634_2
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

2569..3018
DNA (450bp) protein (150aa)
Thiol:disulfide interchange protein DsbA n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPR3_9BACT
Thiol:disulfide interchange protein DsbA {ECO:0000313|EMBL:BAL58149.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
DSBA oxidoreductase
13_1_40cm_scaffold_634_3
unknown

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3015..3272
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_634_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3347..4063)
DNA (717bp) protein (239aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1); K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Fumarate reductase iron-sulfur subunit id=3740911 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
succinate dehydrogenase and fumarate reductase iron-sulfur protein
13_1_40cm_scaffold_634_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4075..4335)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJU6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67529.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_scaffold_634_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4419..5300)
DNA (882bp) protein (294aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Alpha/beta hydrolase fold protein id=1746149 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloalkane dehalogenase
13_1_40cm_scaffold_634_7
CG_Delta_04, Deltaproteobacteria, Proteobacteria, Bacteria

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5383..8550
DNA (3168bp) protein (1056aa)
hypothetical protein Tax=CG_Delta_04
Uncharacterized protein id=2188944 bin=GWB2_Proteobacteria_55_19 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_634_8
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8580..11711)
DNA (3132bp) protein (1044aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJM1_AZOSU
hypothetical protein Tax=GWA2_Rhodocyclales_65_20_curated
hypothetical protein
13_1_40cm_scaffold_634_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11776..13500)
DNA (1725bp) protein (575aa)
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Putative succinate dehydrogenase flavoprotein subunit id=4740802 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_634_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13504..13941)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003655BEC
hypothetical protein
Blr6749 protein {ECO:0000313|EMBL:BAC52014.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
13_1_40cm_scaffold_634_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14006..15688)
DNA (1683bp) protein (561aa)
h16_A3563; 5'-nucleotidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
h16_A3563; 5'-nucleotidase id=14627057 bin=bin7_NC10_sister species=unknown genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
5'-nucleotidase
13_1_40cm_scaffold_634_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15842..17125)
DNA (1284bp) protein (428aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4740848 bin=GWC2_Methylomirabilis_70_16 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
SoxX and SoxA domain Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17130..17462)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfur compound chelating protein SoxZ id=4841180 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxZ
May be SoxZ Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17464..17952)
DNA (489bp) protein (163aa)
sulfur oxidation protein SoxY Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4841179 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxY
13_1_40cm_scaffold_634_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17949..20768)
DNA (2820bp) protein (940aa)
nitrate reductase (EC:1.7.99.4)
Nitrate reductase n=2 Tax=Chloroflexus RepID=A9WIA3_CHLAA
formate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin-related Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20914..22485)
DNA (1572bp) protein (524aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4B5_THERP
4Fe-4S ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
4Fe-4S ferredoxin
Fe-S transmembrane - could be polysulfide reductase / nitrite reductase / tetrathionate reductase Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22581..23120)
DNA (540bp) protein (180aa)
Electron transport protein SCO1/SenC n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y593_LEPCP
electron transport protein SCO1/SenC
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:ACB32323.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptot
cytochrome biosynthesis Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_18
unknown

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comp(23120..23728)
DNA (609bp) protein (203aa)

This feature has no annotations

no conserved domains by NCBI Cristina Butterfield (6/1/15)
13_1_40cm_scaffold_634_19
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23725..24507)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000368031E
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACB28079.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
13_1_40cm_scaffold_634_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24504..25094)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Methyloversatilis universalis RepID=UPI00036D4018
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU36676.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
Displaying 20 items

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