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13_1_40cm_scaffold_524

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_524_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..1314)
DNA (1314bp) protein (438aa)
filamentation induced by cAMP protein Fic Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Filamentation induced by cAMP protein Fic id=1740940 bin=GWD2_Deltaproteobacteria_55_8 species=Mesorhizobium alhagi genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
filamentation induced by cAMP protein Fic
13_1_40cm_scaffold_524_2
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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1725..2546
DNA (822bp) protein (274aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase n=1 Tax=Saccharomonospora glauca K62 RepID=I1D2N6_9PSEU
Dihydrodipicolinate synthase/N-acetylneuraminate lyase {ECO:0000313|EMBL:EIE99210.1}; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source
lysine biosynthesis protein
13_1_40cm_scaffold_524_3
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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2560..4287
DNA (1728bp) protein (576aa)
Extracellular solute-binding protein family 5 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SI21_THEM7
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RBG_16_Armatimonadetes_67_12_curated
family 5 extracellular solute-binding protein
13_1_40cm_scaffold_524_4
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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4382..5302
DNA (921bp) protein (307aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PQW0_9FIRM
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_524_5
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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5274..6164
DNA (891bp) protein (297aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q298_9FIRM
binding-protein-dependent transporters inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_scaffold_524_6
Metallosphaera cuprina, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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6358..6867
DNA (510bp) protein (170aa)
hypothetical protein id=24429369 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sulfolobus tokodaii genus=Sulfolobus taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
magnesium-dependent phosphatase-1
Magnesium-dependent phosphatase-1 {ECO:0000313|EMBL:AEB94462.1}; TaxID=1006006 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.;" source="Metallosphaera cupr
13_1_40cm_scaffold_524_7
RBG_16_Chloroflexi_58_8_curated, Chloroflexi, Bacteria

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6940..8088
DNA (1149bp) protein (383aa)
phosphoserine aminotransferase (EC:2.6.1.1 2.6.1.52) id=24404077 bin=RBG_19FT_COMBO_GAL15_69_19 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hydrogenase small subunit (EC:1.12.-.-)
class V aminotransferase Tax=RBG_16_Chloroflexi_58_8_curated
13_1_40cm_scaffold_524_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

8085..9677
DNA (1593bp) protein (531aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
D-3-phosphoglycerate dehydrogenase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCS8_9FIRM
D-3-phosphoglycerate dehydrogenase
13_1_40cm_scaffold_524_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9770..11224
DNA (1455bp) protein (485aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II33_METNO
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACL57902.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Met
13_1_40cm_scaffold_524_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11281..11874)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D42981
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44932.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
hypothetical protein
13_1_40cm_scaffold_524_11
unknown

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12093..12686
DNA (594bp) protein (198aa)

This feature has no annotations

13_1_40cm_scaffold_524_12
unknown

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comp(12790..13215)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_scaffold_524_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

13454..13660
DNA (207bp) protein (69aa)
hypothetical protein; K03704 cold shock protein (beta-ribbon, CspA family) id=24542611 bin=RBG_19FT_COMBO_GAL15_69_19 species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
cold-shock protein
13_1_40cm_scaffold_524_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(13807..14709)
DNA (903bp) protein (301aa)
id=24398200 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24398200 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_524_15
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(14786..15193)
DNA (408bp) protein (136aa)
two component, sigma54 specific, Fis family transcriptional regulator id=24398201 bin=RBG_19FT_COMBO_GAL15_69_19 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
two component, sigma54 specific, Fis family transcriptional regulator Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_scaffold_524_16
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15190..17490)
DNA (2301bp) protein (767aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] id=24398202 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_524_17
unknown

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comp(17605..17745)
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_scaffold_524_18
unknown

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comp(18003..18140)
DNA (138bp) protein (46aa)

This feature has no annotations

13_1_40cm_scaffold_524_19
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

18468..18845
DNA (378bp) protein (126aa)
id=24398206 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24398206 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_524_20
unknown

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18845..19270
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_scaffold_524_21
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

19546..20904
DNA (1359bp) protein (453aa)
Fis family transcriptional regulator id=24398208 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Fis family transcriptional regulator Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Fis family transcriptional regulator
13_1_40cm_scaffold_524_22
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

21074..22537
DNA (1464bp) protein (488aa)
metal dependent phophohydrolase id=24398209 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
metal dependent phophohydrolase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_scaffold_524_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

22546..23916
DNA (1371bp) protein (457aa)
RNA polymerase sigma-54 subunit RpoN; K03092 RNA polymerase sigma-54 factor id=24398210 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
RNA polymerase sigma-54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
RNA polymerase sigma-54 subunit RpoN
13_1_40cm_scaffold_524_24
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

24103..25089
DNA (987bp) protein (329aa)
alkaline phosphatase synthesis sensor protein PhoR (EC:2.7.3.-) id=24398211 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
alkaline phosphatase synthesis sensor protein PhoR (EC:2.7.3.-) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_524_25
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

25100..25966
DNA (867bp) protein (289aa)
fliA; RNA polymerase sigma factor, flia/whig family; K02405 RNA polymerase sigma factor for flagellar operon FliA id=24398212 bin=RBG_19FT_COMBO_GAL15_69_19 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
fliA; RNA polymerase sigma factor, flia/whig family; K02405 RNA polymerase sigma factor for flagellar operon FliA Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
fliA; RNA polymerase sigma factor, flia/whig family
13_1_40cm_scaffold_524_26
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

25932..26381
DNA (450bp) protein (150aa)
Roadblock/LC7 family protein; K07131 id=24398213 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Roadblock/LC7 family protein; K07131 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_524_27
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

26612..26896
DNA (285bp) protein (95aa)
Scaffold protein Nfu/NifU Tax=RBG_16_Armatimonadetes_67_12_curated
Scaffold protein Nfu/NifU id=24398217 bin=RBG_19FT_COMBO_GAL15_69_19 species=Paenibacillus sp. OSY-SE genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
nitrogen-fixing protein NifU
13_1_40cm_scaffold_524_28
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

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comp(26831..28135)
DNA (1305bp) protein (435aa)
catalytic domain of components of various dehydrogenase complexes; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] id=24398218 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RBG_16_Chloroflexi_68_14_curated
catalytic domain of components of various dehydrogenase complexes
13_1_40cm_scaffold_524_29
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(28212..28862)
DNA (651bp) protein (217aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=24398219 bin=RBG_19FT_COMBO_GAL15_69_19 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
transketolase, central region
13_1_40cm_scaffold_524_30
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(29157..30041)
DNA (885bp) protein (295aa)
pyruvate dehydrogenase; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=24398220 bin=RBG_19FT_COMBO_GAL15_69_19 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
pyruvate dehydrogenase; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
pyruvate dehydrogenase (EC:1.2.4.1)
Displaying 30 items

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