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13_1_40cm_scaffold_4020

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_4020_1
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

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116..607
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003726E11
hypothetical protein Tax=RBG_16_Chloroflexi_52_11_curated
cupin
13_1_40cm_scaffold_4020_2
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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688..1827
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036D0DC1
Alanine racemase, N-terminal domain family
Alanine racemase, N-terminal domain family {ECO:0000313|EMBL:ACM05934.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium
13_1_40cm_scaffold_4020_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(1839..2708)
DNA (870bp) protein (290aa)
sen:SACE_1934 RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=1247227 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFH82822.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" sou
rpoE; RNA polymerase sigma-70 factor, ECF subfamily
13_1_40cm_scaffold_4020_4
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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2828..3211
DNA (384bp) protein (128aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PXH6_KRIFD
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADB29824.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella
13_1_40cm_scaffold_4020_trna_1
unknown

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3315..3387
DNA (73bp)
transferRNA
13_1_40cm_scaffold_4020_5
Thermobaculum terrenum, Thermobaculum, Bacteria

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3407..4606
DNA (1200bp) protein (400aa)
Elongation factor Tu n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CD68_THET1
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermoba
13_1_40cm_scaffold_4020_trna_2
unknown

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4812..4884
DNA (73bp)
transferRNA
13_1_40cm_scaffold_4020_6
R_OD1_Moranbacteria_55_24, Moranbacteria, Parcubacteria, Bacteria

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4898..5158
DNA (261bp) protein (87aa)
Protein translocase subunit SecE Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_55_24_curated
13_1_40cm_scaffold_4020_7
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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5169..6011
DNA (843bp) protein (281aa)
Transcription antitermination protein nusG id=4877449 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
NusG; transcription antiterminator; K02601 transcriptional antiterminator NusG Tax=GWC2_RIF_CHLX_73_18_curated
NusG antitermination factor
13_1_40cm_scaffold_4020_8
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


6077..6502
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RL11_CARHZ
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carbox
13_1_40cm_scaffold_4020_9
R_RIF_OD1_10_43_60, RIF-OD1-1, Parcubacteria, Bacteria

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comp(6492..6905)
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_43_60_curated
Membrane protein-like protein id=3992790 bin=GWF2_Bacteroidetes_40_14 species=unknown genus=unknown taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Bacteroidetes_40_14 organism_group=Bacteroidetes
hypothetical protein
13_1_40cm_scaffold_4020_10
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists


7037..7756
DNA (720bp) protein (240aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RBG_16_RIF_CHLX_69_14_curated
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=14631232 bin=bin9_gal15 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
50S ribosomal protein L1P
13_1_40cm_scaffold_4020_11
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists


7923..8474
DNA (552bp) protein (184aa)
50S ribosomal protein L10 id=4877452 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=GWC2_RIF_CHLX_73_18_curated
50S ribosomal protein L10
13_1_40cm_scaffold_4020_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8488..8895
DNA (408bp) protein (136aa)
50S ribosomal protein L7/L12 n=2 Tax=Rhizobium etli RepID=RL7_RHIEC
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobiu
rplL; 50S ribosomal protein L7/L12
13_1_40cm_scaffold_4020_13
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9063..9905)
DNA (843bp) protein (281aa)
ApbE family lipoprotein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F1K7_VERMA
ApbE family lipoprotein
ApbE family lipoprotein {ECO:0000313|EMBL:AEB45236.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-
13_1_40cm_scaffold_4020_14
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

10324..11934
DNA (1611bp) protein (537aa)
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=GWC2_RIF_CHLX_73_18_curated
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta id=4877454 bin=GWC2_Chloroflexi_73_18 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Displaying 16 items

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