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13_1_40cm_scaffold_1645

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1645_1

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comp(49..546)
DNA (498bp) protein (166aa)
PAS sensor protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037D3C34
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48787.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_1645_2
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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637..1728
DNA (1092bp) protein (364aa)
h16_A0780; signal transduction histidine kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00035D8299
sensor protein Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
13_1_40cm_scaffold_1645_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1725..2354
DNA (630bp) protein (210aa)
Response regulator receiver, LuxR family n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5R7V8_9RHOO
response regulator Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
response regulator
13_1_40cm_scaffold_1645_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2691..3356)
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sporulation domain-containing protein id=12555967 bin=CNBR_ACIDO species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Sporulation domain protein
13_1_40cm_scaffold_1645_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(3530..5131)
DNA (1602bp) protein (534aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=12555968 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_1645_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5221..5817)
DNA (597bp) protein (199aa)
id=12555969 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12555969 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_1645_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

5837..6379
DNA (543bp) protein (181aa)
Molybdenum cofactor guanylyltransferase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CF19_DESTA
mobA1; molybdopterin-guanine dinucleotide biosynthesis protein MobA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
molybdopterin-guanine dinucleotide biosynthesis protein A
13_1_40cm_scaffold_1645_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6431..8422
DNA (1992bp) protein (664aa)
arginine--tRNA ligase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] id=12555971 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
arginyl-tRNA synthetase (EC:6.1.1.19)
13_1_40cm_scaffold_1645_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

8425..9120
DNA (696bp) protein (232aa)
peptidase C26 n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B576CD
peptidase C26; K07010 putative glutamine amidotransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase C26
13_1_40cm_scaffold_1645_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9352..10605)
DNA (1254bp) protein (418aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
deoxyribonuclease; K00599 [EC:2.1.1.-] id=12555978 bin=CNBR_ACIDO species=Frankia sp. BMG5.12 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
deoxyribonuclease/rho motif-related TRAM
13_1_40cm_scaffold_1645_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10813..11520)
DNA (708bp) protein (236aa)
id=12555979 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_1645_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11636..12415)
DNA (780bp) protein (260aa)
coaX; type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) (EC:2.7.1.33) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
coaX; type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UAM6_9FIRM
13_1_40cm_scaffold_1645_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12481..13416)
DNA (936bp) protein (312aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] Tax=RIFCSPLOWO2_02_FULL_Acidobacteri
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] id=12555980 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
biotin--acetyl-CoA-carboxylase ligase
13_1_40cm_scaffold_1645_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13448..14323)
DNA (876bp) protein (292aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nicotinate-nucleotide pyrophosphorylase; K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] id=12555981 bin=CNBR_ACIDO species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
13_1_40cm_scaffold_1645_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


comp(14347..16887)
DNA (2541bp) protein (847aa)
tRNA synthetase valyl/leucyl anticodon-binding protein; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
tRNA synthetase valyl/leucyl anticodon-binding protein; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=12555982 bin=CNBR_ACIDO species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tRNA synthetase valyl/leucyl anticodon-binding protein
13_1_40cm_scaffold_1645_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17158..18354)
DNA (1197bp) protein (399aa)
Response regulator receiver protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAD7_ANADF
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
response regulator receiver protein
13_1_40cm_scaffold_1645_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(18454..18852)
DNA (399bp) protein (133aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
mcmA2; methylmalonyl-CoA mutase subunit alpha; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] id=12555984 bin=CNBR_ACIDO species=Archaeoglobus fulgidus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methylmalonyl-CoA mutase
13_1_40cm_scaffold_1645_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18889..20415)
DNA (1527bp) protein (509aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGL4_CHLTF
Displaying 18 items

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