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13_1_40cm_scaffold_3622

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3622_1
unknown

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comp(2..334)
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_40cm_scaffold_3622_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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1074..1442
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:ABF39411.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_1_40cm_scaffold_3622_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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1469..2578
DNA (1110bp) protein (370aa)
ntrX; two component signal transduction response regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sigma-54 dependent transcriptional regulator id=12557439 bin=CNBR_ACIDO species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
crdA; sigma-54 dependent DNA-binding response regulator
13_1_40cm_scaffold_3622_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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2737..3834
DNA (1098bp) protein (366aa)
ntrX; two component signal transduction response regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sigma-54 dependent transcriptional regulator id=12557439 bin=CNBR_ACIDO species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_3622_5

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4106..5200
DNA (1095bp) protein (365aa)
Transcriptional regulator {ECO:0000313|EMBL:AHN98016.1}; TaxID=1447243 species="Bacteria; environmental samples.;" source="uncultured bacterium lac193.;"
Fis family two component sigma-54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=12557440 bin=CNBR_ACIDO species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_3622_6

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5197..5778
DNA (582bp) protein (194aa)
Periplasmic protein involved in polysaccharide export {ECO:0000313|EMBL:AHN98017.1}; TaxID=1447243 species="Bacteria; environmental samples.;" source="uncultured bacterium lac193.;"
polysaccharide export periplasmic protein; K01991 polysaccharide export outer membrane protein id=12557441 bin=CNBR_ACIDO species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
periplasmic protein involved in polysaccharide export
13_1_40cm_scaffold_3622_7
CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, CNBR_ACIDO, Acidobacteria, Bacteria

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5814..7016
DNA (1203bp) protein (401aa)
id=12557442 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
id=12557442 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_3622_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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7030..7362
DNA (333bp) protein (111aa)
exopolysaccharide biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
gumC1; lipopolysaccharide biosynthesis protein id=12557443 bin=CNBR_ACIDO species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gumC1; lipopolysaccharide biosynthesis protein
13_1_40cm_scaffold_3622_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7329..8492
DNA (1164bp) protein (388aa)
exopolysaccharide biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
gumC1; lipopolysaccharide biosynthesis protein id=12557443 bin=CNBR_ACIDO species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
exopolysaccharide biosynthesis protein
13_1_40cm_scaffold_3622_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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8499..9080
DNA (582bp) protein (194aa)
type II secretory pathway protein ExeA Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
type II secretory pathway protein ExeA id=12557444 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretory pathway protein ExeA
13_1_40cm_scaffold_3622_11

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9352..9723
DNA (372bp) protein (124aa)
capsular exopolysaccharide family protein (EC:2.7.10.2) id=12557445 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:AHN98021.1}; TaxID=1447243 species="Bacteria; environmental samples.;" source="uncultured bacterium lac193.;"
Displaying 11 items

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