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13_1_40cm_scaffold_544

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_544_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..560)
DNA (558bp) protein (186aa)
wcoG; putative cell surface protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12554089 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_544_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

571..1386
DNA (816bp) protein (272aa)
Cbr-col-72; C. briggsae CBR-COL-72 protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=24408280 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Collagen alpha-2(I) chain
13_1_40cm_scaffold_544_3
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1383..3173)
DNA (1791bp) protein (597aa)
Na+/solute symporter n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN77_KORVE
Na+/solute symporter
Na+/solute symporter {ECO:0000313|EMBL:ABF41673.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain E
13_1_40cm_scaffold_544_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3170..4237)
DNA (1068bp) protein (356aa)
beta-lactamase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-lactamase id=12554087 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-lactamase
13_1_40cm_scaffold_544_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4234..5670)
DNA (1437bp) protein (479aa)
SSS sodium solute transporter superfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X72_SOLUE
SSS family solute/sodium (Na+) symporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SSS family solute/sodium (Na+) symporter
13_1_40cm_scaffold_544_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5856..6794
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67SR6_SYMTH
Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_scaffold_544_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

6794..7522
DNA (729bp) protein (243aa)
glucosamine-6-phosphate isomerase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
nagB; glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate isomerase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09B22_STIAD
13_1_40cm_scaffold_544_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7509..8453)
DNA (945bp) protein (315aa)
Putative sugar phosphate isomerase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] id=12554086 bin=CNBR_ACIDO species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
N-acetylmuramic acid 6-phosphate etherase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
N-acetylmuramic acid 6-phosphate etherase
13_1_40cm_scaffold_544_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8503..9393
DNA (891bp) protein (297aa)
recombinase; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
tyrosine recombinase XerD id=12554085 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
recombinase
13_1_40cm_scaffold_544_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9561..10712
DNA (1152bp) protein (384aa)
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase id=4128062 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
13_1_40cm_scaffold_544_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10819..12447
DNA (1629bp) protein (543aa)
php domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PHP domain-containing protein id=12554084 bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_544_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12444..14813)
DNA (2370bp) protein (790aa)
YjgP/YjgQ family permease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
YjgP/YjgQ family permease id=12554083 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_544_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14855..15358
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037CE13F
glycoside hydrolase family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glycoside hydrolase family protein
13_1_40cm_scaffold_544_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

15328..17007
DNA (1680bp) protein (560aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
alpha-amylase/alpha-mannosidase
13_1_40cm_scaffold_544_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17196..18017)
DNA (822bp) protein (274aa)
ParB-like partition protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ParB-like partition protein id=12554082 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ParB-like partition protein
13_1_40cm_scaffold_544_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18010..18765)
DNA (756bp) protein (252aa)
chromosome partitioning ATPase; K03496 chromosome partitioning protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
chromosome partitioning ATPase; K03496 chromosome partitioning protein id=12554081 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosome partitioning ATPase
13_1_40cm_scaffold_544_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18817..19302)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000364E73D
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_scaffold_544_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19307..20701)
DNA (1395bp) protein (465aa)
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
(dimethylallyl)adenosine tRNA methylthiotransferase; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA id=12554079 bin=CNBR_ACIDO species=Chromobacterium violaceum genus=Chromobacterium taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
MiaB family RNA modification protein
13_1_40cm_scaffold_544_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(20705..22471)
DNA (1767bp) protein (589aa)
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) id=12554078 bin=CNBR_ACIDO species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
recN; DNA repair ATPase RecN
13_1_40cm_scaffold_544_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

22526..23359
DNA (834bp) protein (278aa)
protein TolQ; K03562 biopolymer transport protein TolQ Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ id=12554077 bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein TolQ
13_1_40cm_scaffold_544_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23468..23821
DNA (354bp) protein (118aa)
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
TolR protein id=4830639 bin=GWC2_Methylomirabilis_70_16 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
protein TolR
13_1_40cm_scaffold_544_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

23825..24604
DNA (780bp) protein (260aa)
TonB-like protein; K03832 periplasmic protein TonB Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
TonB family protein id=12554075 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_544_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

24601..25962
DNA (1362bp) protein (454aa)
tolB protein; K03641 TolB protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
beta-propeller repeat-containing to-pal system protein TolB; K03641 TolB protein id=12554074 bin=CNBR_ACIDO species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
beta-propeller repeat-containing to-pal system protein TolB
13_1_40cm_scaffold_544_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

25974..26549
DNA (576bp) protein (192aa)
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein id=12554073 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
OmpA/MotB domain protein
13_1_40cm_scaffold_544_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

26554..27393
DNA (840bp) protein (280aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12554072 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_544_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

27551..27991
DNA (441bp) protein (147aa)
ssb-1; single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
single-strand binding protein; K03111 single-strand DNA-binding protein id=12554071 bin=CNBR_ACIDO species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ssb-2; ssDNA-binding protein
13_1_40cm_scaffold_544_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(28932..29303)
DNA (372bp) protein (124aa)
cupin domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cupin domain-containing protein id=12554070 bin=CNBR_ACIDO species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cupin domain-containing protein
13_1_40cm_scaffold_544_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(29300..31072)
DNA (1773bp) protein (591aa)
phosphoenolpyruvate--protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
phosphoenolpyruvate-protein phosphotransferase PtsI id=12554069 bin=CNBR_ACIDO species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_544_29
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(31072..31416)
DNA (345bp) protein (115aa)
Phosphotransferase system, phosphocarrier protein HPr n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T5Z2_9GAMM
ptsH; phosphocarrier protein HPr; K11189 phosphocarrier protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phosphotransferase system, phosphocarrier protein HPr
13_1_40cm_scaffold_544_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(31413..31826)
DNA (414bp) protein (138aa)
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] id=12554067 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PTS system transporter subunit IIA (EC:2.7.1.69)
Displaying items 1-30 of 55 in total

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