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13_1_40cm_scaffold_7129

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_7129_1
unknown

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comp(14..106)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_scaffold_7129_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(118..1515)
DNA (1398bp) protein (466aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YF00_9DELT
radical SAM domain-containing protein; K06871 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
radical SAM domain-containing protein
13_1_40cm_scaffold_7129_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(1848..2138)
DNA (291bp) protein (97aa)
two component system response regulator, sigma54-specific Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_7129_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2925..4313)
DNA (1389bp) protein (463aa)
two component system response regulator, sigma54-specific Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
two component system response regulator, sigma54-specific id=14627447 bin=bin7_NC10_sister species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
two component system response regulator, sigma54-specific
13_1_40cm_scaffold_7129_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4386..4643
DNA (258bp) protein (86aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_7129_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

4656..5981
DNA (1326bp) protein (442aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] id=12557232 bin=CNBR_ACIDO species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dihydrolipoamide dehydrogenase
13_1_40cm_scaffold_7129_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

7264..7407
DNA (144bp) protein (48aa)
2-oxoglutarate dehydrogenase E2 component; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000365A2B2
13_1_40cm_scaffold_7129_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

7452..8060
DNA (609bp) protein (203aa)
lipoate-protein ligase B (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] id=12557230 bin=CNBR_ACIDO species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lipoate-protein ligase B (EC:2.3.1.181)
13_1_40cm_scaffold_7129_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

8152..8877
DNA (726bp) protein (242aa)
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative RNA polymerase ECF-type sigma factor
13_1_40cm_scaffold_7129_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8737..9894)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4L1_MYXSD
macrolide transporter ATP-binding/permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
Displaying 10 items

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