ggKbase home page

13_1_20cm_4_scaffold_6373

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_6373_1
unknown

Not on your lists

comp(1..696)
DNA (696bp) protein (232aa)

This feature has no annotations

13_1_20cm_4_scaffold_6373_2
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(689..1177)
DNA (489bp) protein (163aa)
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_RIF_CHLX_70_13_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4718001 bin=GWC2_Chloroflexi_73_18 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_4_scaffold_6373_3
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1394..2713)
DNA (1320bp) protein (440aa)
Tiorf27 protein n=1 Tax=Rhizobium radiobacter RepID=Q9R6N2_RHIRD
hypothetical protein Tax=RBG_16_RIF_CHLX_72_14_curated
major Facilitator Superfamily protein
13_1_20cm_4_scaffold_6373_4
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2725..3630)
DNA (906bp) protein (302aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" sourc
rnhB; ribonuclease HIII (EC:3.1.26.4)
Ribonuclease id=4711217 bin=GWC2_Bacteroidetes_46_850 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes
13_1_20cm_4_scaffold_6373_5
Streptomyces sp. SM8, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3745..4830
DNA (1086bp) protein (362aa)
pyruvate dehydrogenase E1 subunit alpha n=1 Tax=Streptomyces sp. CNY228 RepID=UPI00037E0548
Pyruvate dehydrogenase E1 component, alpha subunit {ECO:0000313|EMBL:EKC94678.1}; TaxID=1195457 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptom
Branched-chain alpha-keto acid dehydrogenase E1-alpha subunit
13_1_20cm_4_scaffold_6373_6
Mycobacterium abscessus, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4830..5798
DNA (969bp) protein (323aa)
pyruvate dehydrogenase (EC:1.2.4.1)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Streptomyces vitaminophilus RepID=UPI00035C7FC9
Pyruvate dehydrogenase E1 component subunit beta {ECO:0000313|EMBL:EIC66464.1}; TaxID=1158135 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium absce
13_1_20cm_4_scaffold_6373_7
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

5791..6831
DNA (1041bp) protein (347aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RBG_13_Aminicenantes_59_9_curated
Branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M3A079_9NOCA
branched-chain alpha-keto acid dehydrogenase subunit E2
13_1_20cm_4_scaffold_6373_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6824..8080
DNA (1257bp) protein (419aa)
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:CDM66977.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CDM66977.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_20cm_4_scaffold_6373_9
RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8009..8413)
DNA (405bp) protein (135aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67LD3_SYMTH
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYB2_FULL_OD1_Uhrbacteria_57_15_curated
RNA polymerase ECF-type sigma factor
13_1_20cm_4_scaffold_6373_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(8440..10347)
DNA (1908bp) protein (636aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_cur
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] id=24577507 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
13_1_20cm_4_scaffold_6373_11
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(10344..10607)
DNA (264bp) protein (88aa)
leuB1; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RBG_16_Chloroflexi_48_8_curated
3-isopropylmalate dehydrogenase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB61_ANADF
3-isopropylmalate dehydrogenase
Displaying 11 items

View Taxonomy